A transcription and translation-coupled DNA replication system using rolling-circle replication

被引:28
|
作者
Sakatani, Yoshihiro [1 ]
Ichihashi, Norikazu [1 ,2 ]
Kazuta, Yasuaki [2 ]
Yomo, Tetsuya [1 ,2 ,3 ]
机构
[1] Osaka Univ, Grad Sch Informat Sci & Technol, Dept Bioinformat Engn, Suita, Osaka 5650871, Japan
[2] Japan Sci & Technol Agency, Exploratory Res Adv Technol, Suita, Osaka 5650871, Japan
[3] Osaka Univ Univ, Grad Sch Frontier Biosci, Suita, Osaka 5650871, Japan
来源
SCIENTIFIC REPORTS | 2015年 / 5卷
关键词
AMPLIFICATION; POLYMERASE; CELLS;
D O I
10.1038/srep10404
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
All living organisms have a genome replication system in which genomic DNA is replicated by a DNA polymerase translated from mRNA transcribed from the genome. The artificial reconstitution of this genome replication system is a great challenge in in vitro synthetic biology. In this study, we attempted to construct a transcription-and translation-coupled DNA replication (TTcDR) system using circular genomic DNA encoding phi29 DNA polymerase and a reconstituted transcription and translation system. In this system, phi29 DNA polymerase was translated from the genome and replicated the genome in a rolling-circle manner. When using a traditional translation system composition, almost no DNA replication was observed, because the tRNA and nucleoside triphosphates included in the translation system significantly inhibited DNA replication. To minimize these inhibitory effects, we optimized the composition of the TTcDR system and improved replication by approximately 100-fold. Using our system, genomic DNA was replicated up to 10 times in 12 hours at 30 degrees C. This system provides a step toward the in vitro construction of an artificial genome replication system, which is a prerequisite for the construction of an artificial cell.
引用
收藏
页数:9
相关论文
共 50 条
  • [21] In Vitro Transcription/Translation-Coupled DNA Replication through Partial Regeneration of 20 Aminoacyl-tRNA Synthetases
    Hagino, Katsumi
    Ichihashi, Norikazu
    ACS SYNTHETIC BIOLOGY, 2023, 12 (04): : 1252 - 1263
  • [22] DNA REPLICATION - ROLLING CIRCLE MODEL
    GILBERT, W
    DRESSLER, D
    COLD SPRING HARBOR SYMPOSIA ON QUANTITATIVE BIOLOGY, 1968, 33 : 473 - &
  • [23] Automated in vitro evolution of a translation-coupled RNA replication system in a droplet flow reactor
    Tomoaki Yoshiyama
    Tetsuo Ichii
    Tetsuya Yomo
    Norikazu Ichihashi
    Scientific Reports, 8
  • [24] Cell-free DNA screening for common autosomal trisomies using rolling-circle replication in twin pregnancies
    Vivanti, Alexandre J.
    Maestroni, Camille
    Benachi, Alexandra
    Conotte, Stephanie
    Geipel, Annegret
    Kagan, Karl Oliver
    Borrell, Antoni
    El Kenz, Hanane
    Costa, Jean-Marc
    Jani, Jacques C.
    PRENATAL DIAGNOSIS, 2024, 44 (08) : 953 - 958
  • [25] Initiation of Asymmetric Rolling-Circle Plasmid Replication by RepD Studied using Magnetic Tweezers
    Toleikis, Algirdas
    Kunzelmann, Simone
    Mashanov, Gregory I.
    Webb, Martin R.
    Molloy, Justin E.
    BIOPHYSICAL JOURNAL, 2015, 108 (02) : 506A - 507A
  • [26] LINEAR SIMIAN VIRUS-40 DNA FRAGMENTS EXHIBIT A PROPENSITY FOR ROLLING-CIRCLE REPLICATION
    DEICHAITE, I
    LAVERRUDICH, Z
    DORSETT, D
    WINOCOUR, E
    MOLECULAR AND CELLULAR BIOLOGY, 1985, 5 (07) : 1787 - 1790
  • [27] Rolling-circle amplification for the detection of active porcine circovirus type 2 DNA replication in vitro
    Navidad, Paolo Dominic
    Li, Hao
    Mankertz, Annette
    Meehan, Brian
    JOURNAL OF VIROLOGICAL METHODS, 2008, 152 (1-2) : 112 - 116
  • [28] Transfer RNA Synthesis-Coupled Translation and DNA Replication in a Reconstituted Transcription/Translation System
    Miyachi, Ryota
    Shimizu, Yoshihiro
    Ichihashi, Norikazu
    ACS SYNTHETIC BIOLOGY, 2022, 11 (08): : 2791 - 2799
  • [29] oriD structure controls RepD initiation during rolling-circle replication
    Algirdas Toleikis
    Martin R. Webb
    Justin E. Molloy
    Scientific Reports, 8
  • [30] The Different Faces of Rolling-Circle Replication and Its Multifunctional Initiator Proteins
    Wawrzyniak, Pawel
    Plucienniczak, Grazyna
    Bartosik, Dariusz
    FRONTIERS IN MICROBIOLOGY, 2017, 8