A computational study of the interactions of the caespitate molecule with water

被引:23
|
作者
Mammino, Liliana [1 ]
Kabanda, Mwadham M. [1 ]
机构
[1] Univ Venda, Dept Chem, ZA-0950 Thohoyandou, South Africa
关键词
caespitate; caespitate-water adducts; intramolecular and intermolecular hydrogen bonding; PCM; phloroglucinols;
D O I
10.1002/qua.21594
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The water solvent effects on the caespitate molecule-an acylated and prenylated phloroglucinol of natural origin exhibiting antibacterial and antifungal activities-are investigated both as bulk effects and considering explicit water molecules H-bonded to its donor and acceptor centers. All calculations are performed at HF/6-31G(d,p) level and the bulk effect of the solvent is calculated with the PCM method. PCM calculations without explicit water molecules show a change in the relative energy pattern, for which the five lowest energy conformers have only the intramolecular hydrogen bond involving the carbonyl O atom of the acyl chain and one of the neighboring OH groups of the phloroglucinol moiety (first H-bond), whereas in vacuo, the 24 lowest energy conformers (accounting for practically all the population) have also the intramolecular hydrogen bond (second H-bond) involving an O atom of the ester function (with which the prenyl chain ends) and one of the neighboring OH groups of the phloroglucinol moiety. Calculations with explicit water molecules show that the first intramolecular H-bond is mostly maintained, whereas the second H-bond is not maintained on competition with intermolecular H-bonds with water molecules. Preferred geometrical arrangements of water molecules around the caespitate molecule are identified and the effects, on such geometrical preferences, of the presence of the two substituent chains are highlighted by comparison with the adducts of the parent compound. (c) 2008 Wiley Periodicals, Inc.
引用
收藏
页码:1772 / 1791
页数:20
相关论文
共 50 条
  • [21] Weak Ion-Molecule Interactions in the Gas Phase: A High-Pressure Mass Spectrometry and Computational Study of Chloride-Alkane Interactions
    Ziegler, Blake E.
    Gamble, Tanya N.
    Li, Chun
    McMahon, Terry B.
    JOURNAL OF PHYSICAL CHEMISTRY A, 2013, 117 (28): : 5785 - 5793
  • [22] Computational studies of water and carbon dioxide interactions with cellobiose
    Faranak Bazooyar
    Martin Bohlén
    Kim Bolton
    Journal of Molecular Modeling, 2015, 21
  • [23] Hydrogen Bonds of Coordinated Ethylenediamine and a Water Molecule: Joint Crystallographic and Computational Study of Second Coordination Sphere
    Zivkovic, Jelena M.
    Milovanovic, Milan R.
    Zaric, Snezana D.
    CRYSTAL GROWTH & DESIGN, 2022, 22 (09) : 5198 - 5205
  • [24] Computational studies of water and carbon dioxide interactions with cellobiose
    Bazooyar, Faranak
    Bohlen, Martin
    Bolton, Kim
    JOURNAL OF MOLECULAR MODELING, 2015, 21 (01) : 1 - 9
  • [25] THEORETICAL AND COMPUTATIONAL STUDIES OF BIOMACROMOLECULE-WATER INTERACTIONS
    FINNEY, JL
    INORGANICA CHIMICA ACTA-ARTICLES, 1980, 40 (02): : X41 - X41
  • [26] A VIBRATIONAL CASSCF STUDY OF STRETCH-BEND INTERACTIONS AND THEIR INFLUENCE ON INFRARED INTENSITIES IN THE WATER MOLECULE
    CULOT, F
    LARUELLE, F
    LIEVIN, J
    THEORETICA CHIMICA ACTA, 1995, 92 (04): : 211 - 226
  • [27] Probing RNA-Small Molecule Interactions Using Biophysical and Computational Approaches
    Shino, Amiu
    Otsu, Maina
    Imai, Koji
    Fukuzawa, Kaori
    Morishita, Ella Czarina
    ACS CHEMICAL BIOLOGY, 2023, 18 (11) : 2368 - 2376
  • [28] Computational studies of the intermolecular interactions in dimers of the bowl-shaped sumanene molecule
    A. A. S. Karunarathna
    S. Saebo
    Structural Chemistry, 2014, 25 : 1831 - 1836
  • [29] Computational studies of the intermolecular interactions in dimers of the bowl-shaped sumanene molecule
    Karunarathna, A. A. S.
    Saebo, S.
    STRUCTURAL CHEMISTRY, 2014, 25 (06) : 1831 - 1836
  • [30] Misfolding and interactions of Aß proteins: Insight from single molecule experiments and computational analyses
    Lv Zhengjian
    Yuliang Zhang
    Alexey Krasnoslobodsev
    Robin Roychaudhuri
    Margaret Condron
    David Teplow
    Sandor Lovas
    Luda Shlyakhtenko
    Yuri Lyubchenko
    Molecular Neurodegeneration, 8 (Suppl 1)