Sampling rare events in nonequilibrium and nonstationary systems

被引:44
|
作者
Berryman, Joshua T. [1 ]
Schilling, Tanja
机构
[1] Johannes Gutenberg Univ Mainz, Mainz, Germany
来源
JOURNAL OF CHEMICAL PHYSICS | 2010年 / 133卷 / 24期
关键词
NUCLEATION; TRANSITION; DYNAMICS; KINETICS; MODEL; SIMULATIONS; ENSEMBLE; COMPLEX;
D O I
10.1063/1.3525099
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Although many computational methods for rare event sampling exist, this type of calculation is not usually practical for general nonequilibrium conditions, with macroscopically irreversible dynamics and away from both stationary and metastable states. A novel method for calculating the time-series of the probability of a rare event is presented which is designed for these conditions. The method is validated for the cases of the Glauber-Ising model under time-varying shear flow, the Kawasaki-Ising model after a quench into the region between nucleation dominated and spinodal decomposition dominated phase change dynamics, and the parallel open asymmetric exclusion process. The method requires a subdivision of the phase space of the system: it is benchmarked and found to scale well for increasingly fine subdivisions, meaning that it can be applied without detailed foreknowledge of the physically important reaction pathways. (C) 2010 American Institute of Physics. [doi:10.1063/1.3525099]
引用
收藏
页数:10
相关论文
共 50 条
  • [21] Sampling rare switching events in biochemical networks
    Allen, RJ
    Warren, PB
    ten Wolde, PR
    PHYSICAL REVIEW LETTERS, 2005, 94 (01)
  • [22] Investigating rare events by transition interface sampling
    Moroni, D
    van Erp, TS
    Bolhuis, PG
    PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2004, 340 (1-3) : 395 - 401
  • [23] Multicanonical sampling of rare events in random matrices
    Saito, Nen
    Iba, Yukito
    Hukushima, Koji
    PHYSICAL REVIEW E, 2010, 82 (03):
  • [24] QUANTIZATION OF NONEQUILIBRIUM NONSTATIONARY SYSTEM
    Saikhanov, Musa
    INTERNATIONAL JOURNAL OF MODERN PHYSICS B, 2012, 26 (12):
  • [25] Path ensembles and path sampling in nonequilibrium stochastic systems
    Harland, Ben
    Sun, Sean X.
    JOURNAL OF CHEMICAL PHYSICS, 2007, 127 (10):
  • [26] STATISTICAL-ANALYSIS OF RARE EVENTS BY NONSTATIONARY POINT-PROCESSES
    STEINIJANS, VW
    BIOMETRICS, 1981, 37 (01) : 196 - 196
  • [27] Investigating rare events with nonequilibrium work measurements. I. Nonequilibrium transition path probabilities
    Moradi, Mahmoud
    Sagui, Celeste
    Roland, Christopher
    JOURNAL OF CHEMICAL PHYSICS, 2014, 140 (03):
  • [28] THE PROBABILITY OF REACTION EVENTS IN NONEQUILIBRIUM CHEMICAL-SYSTEMS
    VLAD, MO
    SEGAL, E
    REVUE ROUMAINE DE CHIMIE, 1987, 32 (03) : 229 - 234
  • [29] Sampling rare events across dynamical phase transitions
    Perez-Espigares, Carlos
    Hurtado, Pablo I.
    CHAOS, 2019, 29 (08)
  • [30] Sampling rare events: Statistics of local sequence alignments
    Hartmann, AK
    PHYSICAL REVIEW E, 2002, 65 (05):