A rule-based framework for gene regulation pathways discovery

被引：0

作者：

Wilczynski, B ^{[1
]}

Hvidsten, T ^{[1
]}

Kryshtafovych, A ^{[1
]}

Stubbs, L ^{[1
]}

Komorowski, J ^{[1
]}

Fidelis, K ^{[1
]}

机构：

[1] Lawrence Livermore Natl Lab, Livermore, CA 94550 USA

来源：

PROCEEDINGS OF THE 2003 IEEE BIOINFORMATICS CONFERENCE | 2003年

关键词：

D O I：

10.1109/CSB.2003.1227361

中图分类号：

Q [生物科学];

学科分类号：

07 ; 0710 ; 09 ;

摘要：

We present a novel approach for rule discovery in the area of gene regulation. The method is based on supervised machine learning and is designed to reveal relationships between transcription factors and gene expression. As a representation of the gene regulatory circuit we have chosen a special form of the IF-THEN rules associating predefined features, taken here as a generalized idea of transcription factor binding sites in gene regulatory regions, with the corresponding gene expression profiles.

引用

页码：435 / 436

页数：2

共 50 条

[41] Scalable rule-based gene expression data classification
Iwen, Mark A.
Lang, Willis
Patel, Jignesh M.
2008 IEEE 24TH INTERNATIONAL CONFERENCE ON DATA ENGINEERING, VOLS 1-3, 2008, : 1062 - +
[42] A FRAMEWORK FOR THE CREDIT-APPORTIONMENT PROCESS IN RULE-BASED SYSTEMS
HUANG, DJ
IEEE TRANSACTIONS ON SYSTEMS MAN AND CYBERNETICS, 1989, 19 (03): : 489 - 498
[43] A Rule-based Framework of Metadata Extraction from Scientific Papers
Guo, Zhixin
Jin, Hai
2011 TENTH INTERNATIONAL SYMPOSIUM ON DISTRIBUTED COMPUTING AND APPLICATIONS TO BUSINESS, ENGINEERING AND SCIENCE (DCABES), 2011, : 400 - 404
[44] A Domain-independent Rule-based Framework for Event Extraction
Valenzuela-Escarcega, Marco A.
Hahn-Powell, Gus
Hicks, Thomas
Surdeanu, Mihai
PROCEEDINGS OF THE 53RD ANNUAL MEETING OF THE ASSOCIATION FOR COMPUTATIONAL LINGUISTICS AND THE 7TH INTERNATIONAL JOINT CONFERENCE ON NATURAL LANGUAGE PROCESSING (ACL-IJCNLP 2015): SYSTEM DEMONSTRATIONS, 2015, : 127 - 132
[45] Rule-Based Framework for Detection of Smishing Messages in Mobile Environment
Jain, Ankit Kumar
Gupta, B. B.
6TH INTERNATIONAL CONFERENCE ON SMART COMPUTING AND COMMUNICATIONS, 2018, 125 : 617 - 623
[46] Behavioral Reasoning on Semantic Business Processes in a Rule-Based Framework
Smith, Fabrizio
Proietti, Maurizio
AGENTS AND ARTIFICIAL INTELLIGENCE, ICAART 2013, 2014, 449 : 293 - 313
[47] A Rule-based Framework for Creating Instance Data from OpenStreetMap
Eiter, Thomas
Pan, Jeff Z.
Schneider, Patrik
Simkus, Mantas
Xiao, Guohui
WEB REASONING AND RULE SYSTEMS, 2015, 9209 : 93 - 104
[48] Rule-based Video Interpretation Framework: Application to Automated Surveillance
Geerinck, T.
Enescu, V.
Ravyse, I.
Sahli, H.
PROCEEDINGS OF THE FIFTH INTERNATIONAL CONFERENCE ON IMAGE AND GRAPHICS (ICIG 2009), 2009, : 341 - 348
[49] An Algebraic Framework for Modeling of Reactive Rule-Based Intelligent Agents
Ksystra, Katerina
Stefaneas, Petros
Frangos, Panayiotis
SOFSEM 2014: THEORY AND PRACTICE OF COMPUTER SCIENCE, 2014, 8327 : 407 - 418
[50] A Rule-Based Language and Verification Framework of Dynamic Service Composition
Kengne Kungne, Willy
Kouamou, Georges-Edouard
Tangha, Claude
FUTURE INTERNET, 2020, 12 (02):

← 1 2 3 4 5 →