The Victor C plus plus library for protein representation and advanced manipulation

被引：4
|
作者：
Hirsh, Layla [1 ,2 ]
Piovesan, Damiano [1 ]
Giollo, Manuel [1 ,3 ]
Ferrari, Carlo [3 ]
Tosatto, Silvio C. E. [1 ]
机构：
[1] Univ Padua, Dept Biomed Sci, I-35131 Padua, Italy
[2] Pontificia Univ Catolica Peru, Dept Engn, Lima, Peru
[3] Univ Padua, Dept Informat Engn, I-35121 Padua, Italy
来源：
BIOINFORMATICS | 2015年 / 31卷 / 07期
关键词：
COMPUTATIONAL STRUCTURAL BIOLOGY; STRUCTURE PREDICTION; SEQUENCE ALIGNMENTS; SECONDARY STRUCTURE; FRAMEWORK; MODEL; CASP;
D O I：
10.1093/bioinformatics/btu773
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Motivation: Protein sequence and structure representation and manipulation require dedicated software libraries to support methods of increasing complexity. Here, we describe the VIrtual Constrution TOol for pRoteins (Victor) C++ library, an open source platform dedicated to enabling inexperienced users to develop advanced tools and gathering contributions from the community. The provided application examples cover statistical energy potentials, profile-profile sequence alignments and ab initio loop modeling. Victor was used over the last 15 years in several publications and optimized for efficiency. It is provided as a GitHub repository with source files and unit tests, plus extensive online documentation, including a Wiki with help files and tutorials, examples and Doxygen documentation.
引用
收藏
页码：1138 / 1140
页数：3
相关论文
共 50 条
  • [31] FuzzBuilder: Automated building greybox fuzzing environment for C/C plus plus library
    Jang, Joonun
    Kim, Huy Kang
    35TH ANNUAL COMPUTER SECURITY APPLICATIONS CONFERENCE (ACSA), 2019, : 627 - 637
  • [32] Vulnerability Detection in C/C plus plus Source Code With Graph Representation Learning
    Wu, Yuelong
    Lu, Jintian
    Zhang, Yunyi
    Jin, Shuyuan
    2021 IEEE 11TH ANNUAL COMPUTING AND COMMUNICATION WORKSHOP AND CONFERENCE (CCWC), 2021, : 1519 - 1524
  • [33] Kelly plus Victor.
    Peiffer, P
    LIBRARY JOURNAL, 2004, 129 (01) : 156 - 156
  • [34] mr: A C plus plus library for the matching and running of the Standard Model parameters
    Kniehl, Bernd A.
    Pikelner, Andrey F.
    Veretin, Oleg L.
    COMPUTER PHYSICS COMMUNICATIONS, 2016, 206 : 84 - 96
  • [35] JIRL - A C plus plus Library for JPEG Compressed Domain Image Retrieval
    Edmundson, David
    Schaefer, Gerald
    2012 IEEE INTERNATIONAL SYMPOSIUM ON MULTIMEDIA (ISM), 2012, : 210 - 213
  • [36] A resistive magnetohydrodynamics solver using modern C plus plus and the Boost library
    Einkemmer, Lukas
    COMPUTER PHYSICS COMMUNICATIONS, 2016, 206 : 69 - 77
  • [37] HPTT: A High-Performance Tensor Transposition C plus plus Library
    Springer, Paul
    Su, Tong
    Bientinesi, Paolo
    ARRAY'17: PROCEEDINGS OF THE 4TH ACM SIGPLAN INTERNATIONAL WORKSHOP ON LIBRARIES, LANGUAGES, AND COMPILERS FOR ARRAY PROGRAMMING, 2017, : 56 - 62
  • [38] Modular C plus plus Library for Relaxed Unscented Kalman-Filtering
    Kuti, Jozsef
    Galambos, Peter
    ACTA POLYTECHNICA HUNGARICA, 2024, 21 (10) : 57 - 74
  • [39] FloatX: A C plus plus Library for Customized Floating-Point Arithmetic
    Flegar, Goran
    Scheidegger, Florian
    Novakovic, Vedran
    Mariani, Giovani
    Tomas, Andres E.
    Malossi, A. Cristiano, I
    Quintana-Orti, Enrique S.
    ACM TRANSACTIONS ON MATHEMATICAL SOFTWARE, 2019, 45 (04):
  • [40] ColorFull: a C plus plus library for calculations in SU(Nc) color space
    Sjodahl, Malin
    EUROPEAN PHYSICAL JOURNAL C, 2015, 75 (05):
12345