Characterization of the complete chloroplast genome sequence of Chinese endemic species of Aster batangensis (Asteraceae: Astereae) and its phylogenetic implications

被引:1
|
作者
Xie, Jiani [1 ]
Yong, Yuan [2 ]
Li, Tian [3 ]
Lv, Yaqi [3 ]
Zou, Luyao [4 ]
Li, Tingyu [4 ]
Li, Zhuojin
Fu, Zhixi [4 ,5 ,6 ]
机构
[1] Chengdu Univ, Sch Food & Biol Engn, Chengdu, Peoples R China
[2] Southwest Minzu Univ, Coll Chem & Environm Protect Engn, Chengdu, Peoples R China
[3] Zhengzhou Univ, Coll Life Sci, Zhengzhou, Peoples R China
[4] Sichuan Normal Univ, Coll Life Sci, Chengdu, Peoples R China
[5] Sichuan Normal Univ, Sustainable Dev Res Ctr Resources & Environm West, Chengdu, Peoples R China
[6] Sichuan Normal Univ, Inst Applicat & Dev Plant Resources, Chengdu, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 11期
基金
中国国家自然科学基金;
关键词
Aster batangensis; complete chloroplast genome; phylogenomics analysis;
D O I
10.1080/23802359.2021.1990148
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
This study was the first report complete chloroplast genome of Aster batangensis (Astereae: Asteraceae), the perennial herb endemic to China. The plastid genome of Aster batangensis include 132 unique genes, with 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Among these genes, 21 duplicate genes, including10 protein-coding genes, 7 tRNA genes, and 4 rRNA genes were detected. The complete genome size of Aster batangensis has a typical quadripartite circular structure with 152,605 bp in total length, consisting a large single copy (LSC) of 84,351 bp and a small single copy (SSC) of 18,212 bp, separated by a pair of invested repeats (IR) of 25,021 bp. The average GC content of whole plastome sequence is 37.3%, and the LSC, SSC and IR regions is 35.3%, 31.3%, and 43.0%, respectively. The phylogenetic analysis by the maximum likelihood method showed that A. batangensis was closely related to the other members of Astereae (e.g. Aztecaster matudae, Conyza bonariensis, Lagenophora cuchumatanica, Baccharis tricuneata, Baccharis genistelloides)
引用
收藏
页码:3224 / 3225
页数:2
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