A statistical feature of Hurst exponents of essential genes in bacterial genomes

被引:6
|
作者
Liu, Xiao [1 ]
Wang, Shi-Yuan [1 ]
Wang, Jia [1 ]
机构
[1] Chongqing Univ, Coll Commun Engn, Chongqing 400044, Peoples R China
基金
中国国家自然科学基金;
关键词
D O I
10.1039/c1ib00030f
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
At present, methods for determining essential genes depend on biochemical experiments. There is therefore a demand for the development of analysis methods and software for identifying essential genes, based on the common features of these genes. In this study, we employed the Hurst exponent as a characteristic parameter and analyzed its distribution among nine bacterial species. We found that most of the significance levels of the Hurst exponents of essential genes were higher than those of the corresponding full-gene-set. Conversely, most of the significance levels of the Hurst exponents of nonessential genes remained unchanged or only increased slightly. Therefore, we propose that this feature represents a restraint for pre- or post-design checking of bacterial essential genes in computer-aided design.
引用
收藏
页码:93 / 98
页数:6
相关论文
共 50 条
  • [31] Thousands of missed genes found in bacterial genomes and their analysis with COMBREX
    Derrick E Wood
    Henry Lin
    Ami Levy-Moonshine
    Rajiswari Swaminathan
    Yi-Chien Chang
    Brian P Anton
    Lais Osmani
    Martin Steffen
    Simon Kasif
    Steven L Salzberg
    Biology Direct, 7
  • [32] Conserved clusters of functionally related genes in two bacterial genomes
    Tamames, J
    Casari, G
    Ouzounis, C
    Valencia, A
    JOURNAL OF MOLECULAR EVOLUTION, 1997, 44 (01) : 66 - 73
  • [33] A revisit to universal single-copy genes in bacterial genomes
    Wang, Saidi
    Ventolero, Minerva
    Hu, Haiyan
    Li, Xiaoman
    SCIENTIFIC REPORTS, 2022, 12 (01)
  • [34] Is there a role for replication fork asymmetry in the distribution of genes in bacterial genomes?
    Rocha, EPC
    TRENDS IN MICROBIOLOGY, 2002, 10 (09) : 393 - 395
  • [35] Forecasting the dissemination of antibiotic resistance genes across bacterial genomes
    Ellabaan, Mostafa M. H.
    Munck, Christian
    Porse, Andreas
    Imamovic, Lejla
    Sommer, Morten O. A.
    NATURE COMMUNICATIONS, 2021, 12 (01)
  • [36] Many purported pseudogenes in bacterial genomes are bona fide genes
    Cooley, Nicholas P.
    Wright, Erik S.
    BMC GENOMICS, 2024, 25 (01)
  • [38] A revisit to universal single-copy genes in bacterial genomes
    Saidi Wang
    Minerva Ventolero
    Haiyan Hu
    Xiaoman Li
    Scientific Reports, 12
  • [39] Systematic prediction of functionally linked genes in bacterial and archaeal genomes
    Shmakov, Sergey A.
    Faure, Guilhem
    Makarova, Kira S.
    Wolf, Yuri, I
    Severinov, Konstantin, V
    Koonin, Eugene, V
    NATURE PROTOCOLS, 2019, 14 (10) : 3013 - 3031
  • [40] Thousands of missed genes found in bacterial genomes and their analysis with COMBREX
    Wood, Derrick E.
    Lin, Henry
    Levy-Moonshine, Ami
    Swaminathan, Rajiswari
    Chang, Yi-Chien
    Anton, Brian P.
    Osmani, Lais
    Steffen, Martin
    Kasif, Simon
    Salzberg, Steven L.
    BIOLOGY DIRECT, 2012, 7