Whole-genome analysis of a human rabies virus from Sri Lanka

被引：21
|
作者：
Matsumoto, Takashi [2 ]
Ahmed, Kamruddin [1 ]
Wimalaratne, Omala [3 ]
Yamada, Kentaro [1 ]
Nanayakkara, Susilakanthi [3 ]
Perera, Devika [3 ]
Karunanayake, Dushantha [3 ]
Nishizono, Akira [2 ]
机构：
[1] Oita Univ, Res Promot Project, Oita 8795593, Japan
[2] Oita Univ, Dept Microbiol, Fac Med, Yufu, Japan
[3] Med Res Inst, Rabies Lab, Colombo, Sri Lanka
来源：
ARCHIVES OF VIROLOGY | 2011年 / 156卷 / 04期
关键词：
STRAND RNA VIRUSES; DYNEIN LIGHT-CHAIN; MATRIX PROTEIN; ANTIGENIC SITES; IN-VITRO; NUCLEOTIDE-SEQUENCE; NUCLEOPROTEIN GENE; SYNTHETIC PEPTIDES; ESCHERICHIA-COLI; VACCINE STRAIN;
D O I：
10.1007/s00705-010-0905-8
中图分类号：
Q93 [微生物学];
学科分类号：
071005 ; 100705 ;
摘要：
The complete genome sequence of a human rabies virus, strain H-08-1320, from Sri Lanka was determined and compared with other rabies viruses. The size of the genome was 11,926 nt, and it was composed of a 58-nucleotide 3' leader, five protein genes - N (1353 nt), P (894 nt), M (609 nt), G (1575 nt), and L (6387 nt) - and a 70-nt 5' trailer. The intergenic region G-L contained 515 nt. The sizes of the nucleoprotein, phosphoprotein, matrix-protein, glycoprotein and large-protein was 450, 296, 202, 524 and 2,128 residues, respectively. The phosphoprotein and large protein were one amino acid shorter and longer, respectively, than those of most rabies viruses. The glycoprotein of H-08-1320 had a unique amino acid substitution at antigenic site I. Whole-genome phylogenetic analysis showed that strain H-08-1320 formed an independent lineage and did not cluster with rabies viruses from other countries.
引用
收藏
页码：659 / 669
页数：11
相关论文
共 50 条
  • [1] Whole-genome analysis of a human rabies virus from Sri Lanka
    Takashi Matsumoto
    Kamruddin Ahmed
    Omala Wimalaratne
    Kentaro Yamada
    Susilakanthi Nanayakkara
    Devika Perera
    Dushantha Karunanayake
    Akira Nishizono
    Archives of Virology, 2011, 156 : 659 - 669
  • [2] Sri Lanka - Human rabies
    Goonaratna, C
    RABIES CONTROL IN ASIA, 1997, : 188 - 190
  • [3] Whole-genome sequencing and phylogenetic analysis of rabies viruses from Jordan
    AL-Eitan, Laith N.
    Wu, Guanghui
    Golding, Megan
    Tang, Yue
    Goharriz, Hooman
    Marston, Denise A.
    Fooks, Anthony R.
    McElhinney, Lorraine M.
    PLOS NEGLECTED TROPICAL DISEASES, 2021, 15 (05):
  • [4] Rabies virus in a dog imported to the UK from Sri Lanka
    Fooks, Anthony R.
    Harkess, Graeme
    Goddard, Trudy
    Marston, Denise A.
    McElhinney, Lorraine
    Brown, Kevin
    Morgan, Dilys
    Paul, Rob
    Thomas, Peter J.
    Smith, Brian
    VETERINARY RECORD, 2008, 162 (18) : 598 - 598
  • [5] Whole-Genome Sequences of Eight Clinical Isolates of Burkholderia pseudomallei from Melioidosis Patients in Eastern Sri Lanka
    Jayasinghearachchi, Himali S.
    Corea, Enoka M.
    Krishnananthasivam, Shivankari
    Sathkumara, Harindra D.
    Francis, Vaithehi R.
    Abeysekere, Thimirangi R.
    De Silva, Aruna Dharshan
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2019, 8 (33):
  • [6] Molecular epidemiology of human rabies viruses in Sri Lanka
    Matsumoto, Takashi
    Ahmed, Kamruddin
    Karunanayake, Dushantha
    Wimalaratne, Omala
    Nanayakkara, Susilakanthi
    Perera, Devika
    Kobayashi, Yuji
    Nishizono, Akira
    INFECTION GENETICS AND EVOLUTION, 2013, 18 : 160 - 167
  • [7] Elucidating the phylodynamics of endemic rabies virus in eastern Africa using whole-genome sequencing
    Brunker, Kirstyn
    Marston, Denise A.
    Horton, Daniel L.
    Cleaveland, Sarah
    Fooks, Anthony R.
    Kazwala, Rudovick
    Ngeleja, Chanasa
    Lembo, Tiziana
    Sambo, Maganga
    Mtema, Zacharia J.
    Sikana, Lwitiko
    Wilkie, Gavin
    Biek, Roman
    Hampson, Katie
    VIRUS EVOLUTION, 2015, 1 (01)
  • [8] Whole-Genome Analysis of Porcine Epidemic Diarrhea Virus from Yunnan, China
    Zhang, Runting
    Yin, Gefen
    Wang, Yunhua
    Li, Yongneng
    Wang, Xinxian
    Bi, Junlong
    Yang, Guishu
    Qu, Kaixing
    Gao, Libo
    VETERINARY SCIENCES, 2024, 11 (11)
  • [9] Whole genome sequencing data of Leptospira weilii and Leptospira kirschneri isolated from human subjects of Sri Lanka
    Senavirathna, Indika
    Jayasundara, Dinesha
    Warnasekara, Janith
    Matthias, Michael A.
    Vinetz, Joseph M.
    Agampodi, Suneth
    DATA IN BRIEF, 2024, 52
  • [10] Characterization of Sri Lanka rabies virus isolates using nucleotide sequence analysis of nucleoprotein gene
    Arai, YT
    Takahashi, H
    Kameoka, Y
    Shiino, T
    Wimalaratne, O
    Lodmell, DL
    ACTA VIROLOGICA, 2001, 45 (5-6) : 327 - 333
12345