Measurement of backbone hydrogen-deuterium exchange in the type III secretion system needle protein PrgI by solid-state NMR

被引:5
|
作者
Chevelkov, Veniamin [1 ]
Giller, Karin [2 ]
Becker, Stefan [2 ]
Lange, Adam [1 ,3 ]
机构
[1] Leibniz Forschungsinst Mol Pharmakol, Dept Mol Biophys, D-13125 Berlin, Germany
[2] Max Planck Inst Biophys Chem, Dept NMR Based Struct Biol, D-37077 Gottingen, Germany
[3] Humboldt Univ, Inst Biol, D-10115 Berlin, Germany
基金
欧洲研究理事会;
关键词
Magic-angle spinning solid-state NMR; Relax-EXSY; H/D exchange; Deuteration; Amide protons; Proton detection; PrgI; Relaxation; PANCREATIC TRYPSIN-INHIBITOR; AMIDE PROTON-EXCHANGE; SENSITIVITY ENHANCEMENT; POLARIZATION TRANSFER; QUANTITATIVE-ANALYSIS; AMYLOID FIBRILS; H/D EXCHANGE; RATES; SPECTROSCOPY; RESOLUTION;
D O I
10.1016/j.jmr.2017.08.012
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In this report we present site-specific measurements of amide hydrogen-deuterium exchange rates in a protein in the solid state phase by MAS NMR. Employing perdeuteration, proton detection and a high external magnetic field we could adopt the highly efficient Relax-EXSY protocol previously developed for liquid state NMR. According to this method, we measured the contribution of hydrogen exchange on apparent N-15 longitudinal relaxation rates in samples with differing D2O buffer content. Differences in the apparent T-1 times allowed us to derive exchange rates for multiple residues in the type III secretion system needle protein. (C) 2017 The Authors. Published by Elsevier Inc.
引用
收藏
页码:110 / 116
页数:7
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