Genome-wide analysis of genetic diversity and artificial selection in Large White pigs in Russia

被引:6
|
作者
Bakoev, Siroj [1 ,2 ]
Getmantseva, Lyubov [1 ]
Kostyunina, Olga [1 ]
Bakoev, Nekruz [1 ]
Prytkov, Yuri [1 ]
Usatov, Alexander [3 ]
Tatarinova, Tatiana, V [4 ,5 ,6 ,7 ]
机构
[1] Fed Res Ctr Anim Husb, Dubrovitsy, Russia
[2] Ctr Strateg Planning & Management Biomed Hlth Ris, Moscow, Russia
[3] South Fed Univ, Rostov Na Donu, Russia
[4] Univ La Verne, Dept Biol, La Verne, CA USA
[5] Siberian Fed Univ, Inst Fundamental Biol & Biotechnol, Dept Genom & Bioinformat, Krasnoyarsk, Russia
[6] Inst Informat Transmiss Problems, Moscow, Russia
[7] Vavilov Inst Gen Genet, Moscow, Russia
来源
PEERJ | 2021年 / 9卷
基金
俄罗斯科学基金会;
关键词
Artificial selection; Breeding; Selection signals; Farming practices; SIGNATURES;
D O I
10.7717/peerj.11595
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Breeding practices adopted at different farms are aimed at maximizing the profitability of pig farming. In this work, we have analyzed the genetic diversity of Large White pigs in Russia. We compared genomes of historic and modern Large White Russian breeds using 271 pig samples. We have identified 120 candidate regions associated with the differentiation of modern and historic pigs and analyzed genomic differences between the modern farms. The identified genes were associated with height, fitness, conformation, reproductive performance, and meat quality.
引用
收藏
页数:18
相关论文
共 50 条
  • [41] Tuning ReliefF for genome-wide genetic analysis
    Moore, Jason H.
    White, Bill C.
    EVOLUTIONARY COMPUTATION, MACHINE LEARNING AND DATA MINING IN BIOINFORMATICS, PROCEEDINGS, 2007, 4447 : 166 - +
  • [42] Genome-wide analysis for preimplantation genetic diagnosis
    Handyside, Alan H.
    JOURNAL OF MEDICAL GENETICS, 2012, 49 : S29 - S29
  • [43] Genome-wide characterization of genetic diversity and population structure in Secale
    Bolibok-Bragoszewska, Hanna
    Targonska, Malgorzata
    Bolibok, Leszek
    Kilian, Andrzej
    Rakoczy-Trojanowska, Monika
    BMC PLANT BIOLOGY, 2014, 14
  • [44] The power of genetic diversity in genome-wide association studies of lipids
    Sarah E. Graham
    Shoa L. Clarke
    Kuan-Han H. Wu
    Stavroula Kanoni
    Greg J. M. Zajac
    Shweta Ramdas
    Ida Surakka
    Ioanna Ntalla
    Sailaja Vedantam
    Thomas W. Winkler
    Adam E. Locke
    Eirini Marouli
    Mi Yeong Hwang
    Sohee Han
    Akira Narita
    Ananyo Choudhury
    Amy R. Bentley
    Kenneth Ekoru
    Anurag Verma
    Bhavi Trivedi
    Hilary C. Martin
    Karen A. Hunt
    Qin Hui
    Derek Klarin
    Xiang Zhu
    Gudmar Thorleifsson
    Anna Helgadottir
    Daniel F. Gudbjartsson
    Hilma Holm
    Isleifur Olafsson
    Masato Akiyama
    Saori Sakaue
    Chikashi Terao
    Masahiro Kanai
    Wei Zhou
    Ben M. Brumpton
    Humaira Rasheed
    Sanni E. Ruotsalainen
    Aki S. Havulinna
    Yogasudha Veturi
    QiPing Feng
    Elisabeth A. Rosenthal
    Todd Lingren
    Jennifer Allen Pacheco
    Sarah A. Pendergrass
    Jeffrey Haessler
    Franco Giulianini
    Yuki Bradford
    Jason E. Miller
    Archie Campbell
    Nature, 2021, 600 : 675 - 679
  • [45] Genome-wide genetic analysis of polyploidy in yeast
    Zuzana Storchová
    Amanda Breneman
    Jessica Cande
    Joshua Dunn
    Kendra Burbank
    Eileen O'Toole
    David Pellman
    Nature, 2006, 443 : 541 - 547
  • [46] The power of genetic diversity in genome-wide association studies of lipids
    Graham, Sarah E.
    Clarke, Shoa L.
    Wu, Kuan-Han H.
    Kanoni, Stavroula
    Zajac, Greg J. M.
    Ramdas, Shweta
    Surakka, Ida
    Ntalla, Ioanna
    Vedantam, Sailaja
    Winkler, Thomas W.
    Locke, Adam E.
    Marouli, Eirini
    Hwang, Mi Yeong
    Han, Sohee
    Narita, Akira
    Choudhury, Ananyo
    Bentley, Amy R.
    Ekoru, Kenneth
    Verma, Anurag
    Trivedi, Bhavi
    Martin, Hilary C.
    Hunt, Karen A.
    Hui, Qin
    Klarin, Derek
    Zhu, Xiang
    Thorleifsson, Gudmar
    Helgadottir, Anna
    Gudbjartsson, Daniel F.
    Holm, Hilma
    Olafsson, Isleifur
    Akiyama, Masato
    Sakaue, Saori
    Terao, Chikashi
    Kanai, Masahiro
    Zhou, Wei
    Brumpton, Ben M.
    Rasheed, Humaira
    Ruotsalainen, Sanni E.
    Havulinna, Aki S.
    Veturi, Yogasudha
    Feng, QiPing
    Rosenthal, Elisabeth A.
    Lingren, Todd
    Pacheco, Jennifer Allen
    Pendergrass, Sarah A.
    Haessler, Jeffrey
    Giulianini, Franco
    Bradford, Yuki
    Miller, Jason E.
    Campbell, Archie
    NATURE, 2021, 600 (7890) : 675 - +
  • [47] Genome-wide genetic analysis of polyploidy in yeast
    Storchova, Zuzana
    Breneman, Amanda
    Cande, Jessica
    Dunn, Joshua
    Burbank, Kendra
    O'Toole, Eileen
    Pellman, David
    NATURE, 2006, 443 (7111) : 541 - 547
  • [48] Genome-Wide Changes in Genetic Diversity in a Population of Myotis lucifugus Affected by White-Nose Syndrome
    Lilley, Thomas M.
    Wilson, Ian W.
    Field, Kenneth A.
    Reeder, DeeAnn M.
    Vodzak, Megan E.
    Turner, Gregory G.
    Kurta, Allen
    Blomberg, Anna S.
    Hoff, Samantha
    Herzog, Carl J.
    Sewall, Brent J.
    Paterson, Steve
    G3-GENES GENOMES GENETICS, 2020, 10 (06): : 2007 - 2020
  • [49] Genome-wide SNP analysis to assess the genetic population structure and diversity of Acrocomia species
    Diaz, Brenda Gabriela
    Zucchi, Maria Imaculada
    Alves-Pereira, Alessandro
    de Almeida, Caleo Panhoca
    Lima Moraes, Aline Costa
    Vianna, Suelen Alves
    Azevedo-Filho, Joaquim
    Colombo, Carlos Augusto
    PLOS ONE, 2021, 16 (07):
  • [50] Genome-wide distribution of simple sequence repeats in pomegranate and their application to the analysis of genetic diversity
    Liu, Chunyan
    Li, Jiyu
    Qin, Gaihua
    TREE GENETICS & GENOMES, 2020, 16 (02)