Using DNA barcode data to add leaves to the Trichoptera tree of life

被引:5
|
作者
Frandsen, Paul B. [1 ]
Zhou, Xin [2 ,3 ]
Flint, Oliver, Jr. [4 ]
Kjer, Karl M. [5 ]
机构
[1] Smithsonian Inst, Off Chief Informat Officer, Off Res Informat Serv, POB 37012, Washington, DC 20013 USA
[2] China Agr Univ, Beijing Adv Innovat Ctr Food Nutr & Human Hlth, Beijing 100193, Peoples R China
[3] China Agr Univ, Coll Food Sci & Nutr Engn, Beijing 100083, Peoples R China
[4] Smithsonian Inst, Natl Museum Nat Hist, Dept Entomol, Washington, DC 20013 USA
[5] Univ Calif Davis, Dept Entomol & Nematol, Acad Surg 1282, Davis, CA 95616 USA
关键词
Trichoptera barcoding; mitochondiral cytochrome oxidase c subunit 1 (COI); phylograms; CADDISFLIES INSECTA; SEQUENCE ALIGNMENT; PHYLOGENY; LARVAE;
D O I
10.11646/zoosymposia.10.1.16
中图分类号
Q96 [昆虫学];
学科分类号
摘要
The Trichoptera barcode of life initiative has gathered barcodes for a large portion of Trichoptera species diversity. Although the primary use of these data is species identification, they can also be used to generate species-level phylogenetic hypotheses. In order to ameliorate the well-documented difficulties of resolving deep divergences with the COI barcode fragment, we used a method of defining well-supported nodes from other data sources and filling out the "leaves" within these defined nodes of the Trichoptera tree of life with trees generated from the barcode fragment. We demonstrate the potential of this approach with the generation of a tree for Xiphocentronidae + Psychomyiidae. Using this example, we present two suspicious clades that warranted a more careful analysis, and demonstrate that a simple analysis of barcodes can generate and help answer other, related questions. We find that Zelandoptila is supported as belonging to Ecnomidae rather than Psychomyiidae, and we placed an unidentified specimen from the Smithsonian National Museum of Natural History collection as sister to Beraeidae.
引用
收藏
页码:193 / 199
页数:7
相关论文
共 50 条
  • [31] DNA barcode-based survey of Trichoptera in the Crooked River reveals three new species records for British Columbia
    Erasmus, Daniel J.
    Yurkowski, Emily A.
    Huber, Dezene P. W.
    PEERJ, 2018, 6
  • [32] New data for the tree of life
    York A.
    Nature Reviews Microbiology, 2020, 18 (2) : 63 - 63
  • [33] Complementary studies of the Perlidae (Insecta: Plecoptera) fauna from the Paranapiacaba Mountains using DNA barcode data
    De Almeida, Lucas Henrique
    Duarte, Tacio
    da Conceicao Bispo, Pitagoras
    ZOOTAXA, 2024, 5496 (04) : 500 - 508
  • [34] Novel Class Detection in Concept Drifting Data Streams Using Decision Tree Leaves
    Saha, Deepita
    Haque, Md Mozzammel
    Sarkar, Akash
    Alam, Famina
    Farid, Dewan Md
    Rahman, Chowdhury Mofizur
    Shatabda, Swakkhar
    2018 4TH IEEE INTERNATIONAL WIE CONFERENCE ON ELECTRICAL AND COMPUTER ENGINEERING (IEEE WIECON-ECE 2018), 2018, : 87 - 90
  • [35] DNA Sensing across the Tree of Life
    Gallucci, Stefania
    Maffei, Massimo E.
    TRENDS IN IMMUNOLOGY, 2017, 38 (10) : 719 - 732
  • [36] Integrating DNA barcode data and taxonomic practice: Determination, discovery, and description
    Goldstein, Paul Z.
    DeSalle, Rob
    BIOESSAYS, 2011, 33 (02) : 135 - 147
  • [37] VCode - Pervasive data transfer using video barcode
    Xu Liu
    Doermann, David
    Li, Huiping
    IEEE TRANSACTIONS ON MULTIMEDIA, 2008, 10 (03) : 361 - 371
  • [38] Associating life stages and sexes of Nearctic Polycentropus Curtis, 1835 (Trichoptera: Polycentropodidae) using mitochondrial DNA barcoding
    Orfinger, Alexander B.
    Morse, John C.
    Hix, Raymond L.
    ECOLOGY AND EVOLUTION, 2022, 12 (03):
  • [39] Identification of fungal genus level using DNA barcode method
    Kim, Dong-Hyeon
    Kang, Dong-Jin
    Lee, Ji-Yeon
    Cho, Eun-Min
    Yang, Sung
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2017, 253
  • [40] Aspergillus and Penicillium identification using DNA sequences: barcode or MLST?
    Peterson, Stephen W.
    APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2012, 95 (02) : 339 - 344