Gene Selection Using Hybrid Multi-Objective Cuckoo Search Algorithm With Evolutionary Operators for Cancer Microarray Data

被引:23
|
作者
Othman, Mohd Shahizan [1 ]
Kumaran, Shamini Raja [1 ]
Yusuf, Lizawati Mi [1 ]
机构
[1] Univ Teknol Malaysia, Sch Comp Fac Engn, Skudai 81310, Malaysia
关键词
Feature extraction; Cancer; Classification algorithms; Optimization; Gene expression; Particle swarm optimization; Space exploration; Gene selection; cancer microarray data; cuckoo search; multi-objective; evolutionary operators; PARTICLE SWARM OPTIMIZATION; SERUM;
D O I
10.1109/ACCESS.2020.3029890
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Microarray data play a huge role in recognizing a proper cancer diagnosis and classification. In most microarray data set consist of thousands of genes, but the majority number of genes are irrelevant to the diseases. An efficient algorithm for gene selection becomes important to deal with large microarray data. The main challenge is to analyze and select the relevant genes with maximum classification accuracy. Various algorithms were proposed for gene classification in previous studies, however, limited success was succeeded due to the selection of many genes in the high-dimensional microarray data. This study proposed and developed a hybrid multi-objective cuckoo search with evolutionary operators for gene selection. Evolutionary operators that are used in this article were double mutation and single crossover operators. The motivation behind this research is to improve the dimensions values and explorative search abilities. Multi-objective cuckoo search with evolutionary operators employed the selection of informative genes among the high-dimensional cancer microarray data. Experiments were conducted on seven publicly available and high-dimensional cancer microarray data sets. These microarray data sets consist of approximately 2000 to 15000 genes. The results from the experiments concluded that the developed algorithm, multi-objective cuckoo search with evolutionary operators outperforms cuckoo search and multi-objective cuckoo search algorithms with a smaller number of selected significant genes.
引用
收藏
页码:186348 / 186361
页数:14
相关论文
共 50 条
  • [41] Improving an Evolutionary Multi-objective Algorithm for the Biclustering of Gene Expression Data
    Brizuela, Carlos A.
    Luna-Taylor, Jorge E.
    Martinez-Perez, Israel
    Guillen, Hugo A.
    Rodriguez, David O.
    Beltran-Verdugo, Armando
    2013 IEEE CONGRESS ON EVOLUTIONARY COMPUTATION (CEC), 2013, : 221 - 228
  • [42] Multi-objective Cuckoo Algorithm for Mobile Devices Network Architecture Search
    Zhang, Nan
    Wang, Jianzong
    Yang, Jian
    Qu, Xiaoyang
    Xiao, Jing
    ARTIFICIAL NEURAL NETWORKS AND MACHINE LEARNING, ICANN 2020, PT I, 2020, 12396 : 312 - 324
  • [43] A Clonal Selection Adaptive Local Search Operator for multi-objective optimization evolutionary algorithm
    Li, Yong
    Wang, Yu
    Zhang, Yuxian
    An, Yuejun
    PROCEEDINGS OF THE 2012 24TH CHINESE CONTROL AND DECISION CONFERENCE (CCDC), 2012, : 755 - 757
  • [44] BICLUSTERING OF GENE EXPRESSION DATA WITH MULTI OBJECTIVE CUCKOO SEARCH
    Yin, Lu
    Liu, Yongguo
    OXIDATION COMMUNICATIONS, 2016, 39 (1A): : 947 - 958
  • [45] Feature Selection Technique for Microarray Data Using Multi-objective Jaya Algorithm Based on Chaos Theory
    Chaudhuri, Abhilasha
    Sahu, Tirath Prasad
    MACHINE LEARNING AND AUTONOMOUS SYSTEMS, 2022, 269 : 399 - 410
  • [46] Multi-objective optimization in the presence of practical constraints using non-dominated sorting hybrid cuckoo search algorithm
    Balasubbareddy, M.
    Sivanagaraju, S.
    Suresh, Chintalapudi V.
    ENGINEERING SCIENCE AND TECHNOLOGY-AN INTERNATIONAL JOURNAL-JESTECH, 2015, 18 (04): : 603 - 615
  • [47] A hybrid multi-objective evolutionary algorithm with feedback mechanism
    Chao Lu
    Liang Gao
    Xinyu Li
    Bing Zeng
    Feng Zhou
    Applied Intelligence, 2018, 48 : 4149 - 4173
  • [48] μMOSM: A hybrid multi-objective micro evolutionary algorithm
    Abdi, Yousef
    Asadpour, Mohammad
    Seyfari, Yousef
    ENGINEERING APPLICATIONS OF ARTIFICIAL INTELLIGENCE, 2023, 126
  • [49] A hybrid multi-objective evolutionary algorithm with feedback mechanism
    Lu, Chao
    Gao, Liang
    Li, Xinyu
    Zeng, Bing
    Zhou, Feng
    APPLIED INTELLIGENCE, 2018, 48 (11) : 4149 - 4173
  • [50] Optimizing Gene Selection and Cancer Classification with Hybrid Sine Cosine and Cuckoo Search Algorithm
    Yaqoob, Abrar
    Verma, Navneet Kumar
    Aziz, Rabia Musheer
    JOURNAL OF MEDICAL SYSTEMS, 2024, 48 (01)