Nexplorer: phylogeny-based exploration of sequence family data

被引：7
|
作者：
Gopalan, V
Qiu, WG
Chen, MZ
Stoltzfus, A
机构：
[1] Ctr Adv Res Biotechnol, Rockville, MD 20850 USA
[2] CUNY Hunter Coll, Dept Biol Sci, New York, NY 10021 USA
[3] Natl Inst Stand & Technol, Div Biochem Sci, Gaithersburg, MD 20899 USA
来源：
BIOINFORMATICS | 2006年 / 22卷 / 01期
关键词：
D O I：
10.1093/bioinformatics/bti747
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
Nexplorer is a web-based program for interactive browsing and manipulation of character data in NEXUS format, well suited for use with alignments and trees representing families of homologous genes or proteins. Users may upload a sequence family dataset, or choose from one of several thousand already available. Nexplorer provides a flexible means to develop customized views that combine a tree and a data matrix or alignment, to create subsets of data, and to output data files or publication-quality graphics.
引用
收藏
页码：120 / 121
页数：2
相关论文
共 50 条
  • [41] A multi gene sequence-based phylogeny of the Musaceae (banana) family
    Pavla Christelová
    Miroslav Valárik
    Eva Hřibová
    Edmond De Langhe
    Jaroslav Doležel
    BMC Evolutionary Biology, 11
  • [42] Phylogeny of ants (Formicidae) based on morphology and DNA sequence data
    Astruc, C
    Julien, I
    Errard, C
    Lenoir, A
    MOLECULAR PHYLOGENETICS AND EVOLUTION, 2004, 31 (03) : 880 - 893
  • [43] Phylogeny of Saururaceae based on mitochondrial matR gene sequence data
    Meng, SW
    Chen, ZD
    Li, DZ
    Liang, HX
    JOURNAL OF PLANT RESEARCH, 2002, 115 (1118) : 71 - 76
  • [44] Flora of the hot deserts: emerging patterns from phylogeny-based diversity studies
    Scherson, Rosa A.
    Luebert, Federico
    Pliscoff, Patricio
    Fuentes-Castillo, Taryn
    AMERICAN JOURNAL OF BOTANY, 2020, 107 (11) : 1467 - 1469
  • [45] Phylogeny of the Brachytheciaceae (Bryophyta) based on morphology and sequence level data
    Huttunen, S
    Ignatov, MS
    CLADISTICS, 2004, 20 (02) : 151 - 183
  • [46] Phylogeny of Spirogyra and Sirogonium (Zygnematophyceae) based on rbcL sequence data
    Drummond, CS
    Hall, J
    Karol, KG
    Delwiche, CF
    McCourt, RM
    JOURNAL OF PHYCOLOGY, 2005, 41 (05) : 1055 - 1064
  • [47] PHYLOGENY OF ANOLES BASED ON MT DNA-SEQUENCE DATA
    LOSOS, JB
    DEQUEIROZ, K
    LARSON, A
    AMERICAN ZOOLOGIST, 1990, 30 (04): : A51 - A51
  • [48] Phylogeny and biogeography of Rhus (Anacardiaceae) based on its sequence data
    Miller, AJ
    Young, DA
    Wen, J
    INTERNATIONAL JOURNAL OF PLANT SCIENCES, 2001, 162 (06) : 1401 - 1407
  • [49] Phylogeny of Saururaceae based on mitochondrial matR gene sequence data
    Shao-Wu Meng
    Zhi-Duan Chen
    De-Zhu Li
    Han-Xing Liang
    Journal of Plant Research, 2002, 115 : 0071 - 0076
  • [50] Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification
    Sterli, Juliana
    Pol, Diego
    Laurin, Michel
    CLADISTICS, 2013, 29 (03) : 233 - 246
12345