Ionic effects on the elasticity of single DNA molecules

被引:824
作者
Baumann, CG
Smith, SB
Bloomfield, VA
Bustamante, C
机构
[1] UNIV OREGON,INST MOL BIOL,EUGENE,OR 97403
[2] UNIV OREGON,DEPT CHEM,EUGENE,OR 97403
[3] UNIV MINNESOTA,DEPT BIOCHEM,ST PAUL,MN 55108
[4] UNIV OREGON,HOWARD HUGHES MED INST,EUGENE,OR 97403
关键词
D O I
10.1073/pnas.94.12.6185
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
We used a force-measuring laser tweezers apparatus to determine the elastic properties of lambda-bacteriophage DNA as a function of ionic strength and in the presence of multivalent cations. The electrostatic contribution to the persistence length P varied as the inverse of the ionic strength in monovalent salt, as predicted by the standard worm-like polyelectrolyte model, However, ionic strength is not always the dominant variable in determining the elastic properties of DNA, Monovalent and multivalent ions have quite different effects even when present at the same ionic strength, Multivalent ions lead to P values as low as 250-300 Angstrom, well below the high-salt ''fully neutralized'' value of 450-500 A characteristic of DNA in monovalent salt, The ions Mg2+ and Co(NH3)(6)(3+), in which the charge is centrally concentrated, yield lower P values than the polyamines putrescine(2+) and spermidine(3+), in which the charge is linearly distributed. The elastic stretch modulus, S, and P display opposite trends with ionic strength, in contradiction to predictions of macroscopic elasticity theory, DNA is well described as a worm-like chain at concentrations of trivalent cations capable of inducing condensation, if condensation is prevented by keeping the molecule stretched, A retractile force appears in the presence of multivalent cations at molecular extensions that allow intramolecular contacts, suggesting condensation in stretched DNA occurs by a ''thermal ratchet'' mechanism.
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页码:6185 / 6190
页数:6
相关论文
共 44 条
[31]   Macroion attraction due to electrostatic correlation between screening counterions .1. Mobile surface-adsorbed ions and diffuse ion cloud [J].
Rouzina, I ;
Bloomfield, VA .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (23) :9977-9989
[32]  
SAENGER W, 1984, PRINCIPLES NUCLEIC A
[33]   STATIC CONTRIBUTIONS TO THE PERSISTENCE LENGTH OF DNA AND DYNAMIC CONTRIBUTIONS TO DNA CURVATURE [J].
SCHELLMAN, JA ;
HARVEY, SC .
BIOPHYSICAL CHEMISTRY, 1995, 55 (1-2) :95-114
[34]   ELECTROSTATIC PERSISTENCE LENGTH OF A WORMLIKE POLYELECTROLYTE [J].
SKOLNICK, J ;
FIXMAN, M .
MACROMOLECULES, 1977, 10 (05) :944-948
[35]   Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules [J].
Smith, SB ;
Cui, YJ ;
Bustamante, C .
SCIENCE, 1996, 271 (5250) :795-799
[36]   DIRECT MECHANICAL MEASUREMENTS OF THE ELASTICITY OF SINGLE DNA-MOLECULES BY USING MAGNETIC BEADS [J].
SMITH, SB ;
FINZI, L ;
BUSTAMANTE, C .
SCIENCE, 1992, 258 (5085) :1122-1126
[37]   EFFECTS OF NA+ ON THE PERSISTENCE LENGTH AND EXCLUDED VOLUME OF T7-BACTERIOPHAGE DNA [J].
SOBEL, ES ;
HARPST, JA .
BIOPOLYMERS, 1991, 31 (13) :1559-1564
[38]   The elasticity of a single supercoiled DNA molecule [J].
Strick, TR ;
Allemand, JF ;
Bensimon, D ;
Bensimon, A ;
Croquette, V .
SCIENCE, 1996, 271 (5257) :1835-1837
[39]   IONIC AND STRUCTURAL EFFECTS ON THE THERMAL HELIX COIL TRANSITION OF DNA COMPLEXED WITH NATURAL AND SYNTHETIC POLYAMINES [J].
THOMAS, TJ ;
BLOOMFIELD, VA .
BIOPOLYMERS, 1984, 23 (07) :1295-1306
[40]   Structural specificity effects of trivalent polyamine analogues on the stabilization and conformational plasticity of triplex DNA [J].
Thomas, TJ ;
Kulkarni, GD ;
Greenfield, NJ ;
Shirahata, A ;
Thomas, T .
BIOCHEMICAL JOURNAL, 1996, 319 :591-599