Hadoop-based Genome Comparisons

被引：0
|
作者：
Heinzlreiter, Paul [1 ]
Krieger, Michael T. [1 ]
Leitner, Iris [1 ]
机构：
[1] RISC Software GmbH, A-4232 Hagenberg, Austria
来源：
SECOND INTERNATIONAL CONFERENCE ON CLOUD AND GREEN COMPUTING / SECOND INTERNATIONAL CONFERENCE ON SOCIAL COMPUTING AND ITS APPLICATIONS (CGC/SCA 2012) | 2012年
关键词：
BigData application; bioinformatics; genome comparison; Hadoop; HBase; MapReduce;
D O I：
10.1109/CGC.2012.83
中图分类号：
TP3 [计算技术、计算机技术];
学科分类号：
0812 ;
摘要：
Due to the ever increasing amounts of data in application areas relevant both for business and research, the requirements for data handling have increased significantly over the last years, often exceeding the capabilities of standard software, which has been used in specific application areas. To face this challenges software needs to be adapted or rewritten to integrate novel big data handling techniques. This paper focuses on the implementation of a genome sequence comparison application from the domain of bioinformatics running on top of Hadoop while relying on HBase for data management and MapReduce jobs for computation.
引用
收藏
页码：695 / 701
页数：7
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