Subdiffusion in hair bundle dynamics: The role of protein conformational fluctuations

被引:1
|
作者
Sharma, Rati [1 ]
Cherayil, Binny J. [1 ]
机构
[1] Indian Inst Sci, Dept Inorgan & Phys Chem, Bangalore 560012, Karnataka, India
来源
JOURNAL OF CHEMICAL PHYSICS | 2012年 / 137卷 / 21期
关键词
TRANSDUCTION CHANNELS; COHERENT MOTION; TIP LINKS; CELL; STEREOCILIA; ADAPTATION; EQUATION; SCALE; MODEL;
D O I
10.1063/1.4768902
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The detection of sound signals in vertebrates involves a complex network of different mechano-sensory elements in the inner ear. An especially important element in this network is the hair bundle, an antenna-like array of stereocilia containing gated ion channels that operate under the control of one or more adaptation motors. Deflections of the hair bundle by sound vibrations or thermal fluctuations transiently open the ion channels, allowing the flow of ions through them, and producing an electrical signal in the process, eventually causing the sensation of hearing. Recent high frequency (0.1-10 kHz) measurements by Kozlov et al. [Proc. Natl. Acad. Sci. U. S. A. 109, 2896 (2012)] of the power spectrum and the mean square displacement of the thermal fluctuations of the hair bundle suggest that in this regime the dynamics of the hair bundle are subdiffusive. This finding has been explained in terms of the simple Brownian motion of a filament connecting neighboring stereocilia (the tip link), which is modeled as a viscoelastic spring. In the present paper, the diffusive anomalies of the hair bundle are ascribed to tip link fluctuations that evolve by fractional Brownian motion, which originates in fractional Gaussian noise and is characterized by a power law memory. The predictions of this model for the power spectrum of the hair bundle and its mean square displacement are consistent with the experimental data and the known properties of the tip link. (C) 2012 American Institute of Physics. [http://dx.doi.org/10.1063/1.4768902]
引用
收藏
页数:6
相关论文
共 50 条
  • [41] Laboratory evolution of protein conformational dynamics
    Campbell, Eleanor C.
    Correy, Galen J.
    Mabbitt, Peter D.
    Buckle, Ashley M.
    Tokuriki, Nobuhiko
    Jackson, Colin J.
    CURRENT OPINION IN STRUCTURAL BIOLOGY, 2018, 50 : 49 - 57
  • [42] Protein conformational dynamics and phenotypic switching
    Prakash Kulkarni
    Srisairam Achuthan
    Supriyo Bhattacharya
    Mohit Kumar Jolly
    Sourabh Kotnala
    Vitor B. P. Leite
    Atish Mohanty
    John Orban
    Susmita Roy
    Govindan Rangarajan
    Ravi Salgia
    Biophysical Reviews, 2021, 13 : 1127 - 1138
  • [43] Conformational dynamics and ensembles in protein folding
    Munoz, Victor
    ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 2007, 36 : 395 - 412
  • [44] Protein conformational dynamics and phenotypic switching
    Kulkarni, Prakash
    Achuthan, Srisairam
    Bhattacharya, Supriyo
    Jolly, Mohit
    Kotnala, Sourabh
    Leite, Vitor B. P.
    Mohanty, Atish
    Orban, John
    Roy, Susmita
    Rangarajan, Govindan
    Salgia, Ravi
    BIOPHYSICAL REVIEWS, 2021, 13 (06) : 1499 - 1500
  • [45] Origin of conformational dynamics in a globular protein
    Damry, Adam M.
    Mayer, Marc M.
    Broom, Aron
    Goto, Natalie K.
    Chica, Roberto A.
    COMMUNICATIONS BIOLOGY, 2019, 2 (1)
  • [46] Protein evolution and foldability by conformational dynamics
    Ozkan, S. Banu
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 243
  • [47] CONFORMATIONAL CHANGE AND DYNAMICS OF PROTEIN STRUCTURES
    LESK, M
    JOURNAL OF MOLECULAR GRAPHICS, 1985, 3 (03): : 101 - 101
  • [48] Conformational dynamics of supramolecular protein assemblies
    Kim, Do-Nyun
    Nguyen, Cong-Tri
    Bathe, Mark
    JOURNAL OF STRUCTURAL BIOLOGY, 2011, 173 (02) : 261 - 270
  • [49] BUNDLE BLOT PURIFICATION AND INITIAL PROTEIN CHARACTERIZATION OF HAIR CELL STEREOCILIA
    SHEPHERD, GMG
    BARRES, BA
    COREY, DP
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1989, 86 (13) : 4973 - 4977
  • [50] Conformational dynamics data bank: a database for conformational dynamics of proteins and supramolecular protein assemblies
    Kim, Do-Nyun
    Altschuler, Josiah
    Strong, Campbell
    McGill, Gael
    Bathe, Mark
    NUCLEIC ACIDS RESEARCH, 2011, 39 : D451 - D455