Development and Implementation of Recursive Coarse-Grained Particle Method for Meso-Scale Simulation

被引:10
|
作者
Kobayashi, Ryo [1 ,2 ]
Nakamura, Takahide [1 ,2 ]
Ogata, Shuji [1 ,2 ]
机构
[1] Nagoya Inst Technol, Grad Sch Engn, Nagoya, Aichi 4668555, Japan
[2] Japan Sci & Technol Agcy, CREST, Kawaguchi, Saitama 3320012, Japan
关键词
multiscale simulation; coarse-graining method; hybrid simulation; molecular dynamics;
D O I
10.2320/matertrans.MB200813
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
A coarse-graining method has been proposed [R. E. Rudd and J. Q. Broughton: Phys. Rev. B 58 (1999) R5893-R5896] for a crystalline of atoms, in which the inter-particle interaction is obtained through coarse-graining of the partition function of the atomic Hamiltonian in the harmonic approximation, Thou.-h the method has attractive features such as its natural incorporation of atomistic phonons, the original formulation limits its application to small periodic systems without surfaces. In this paper, we improve the method as follows: (i) we introduce a recursive coarse-graining procedure to overcome the size limitation problem, (ii) we rewrite the deformation energy in both translation and rotation invariant form to make it applicable to macroscopically deformed systems, (iii) we extend the formulation for multi-component systems, and (iv) we incorporate the thermal expansion and softening of the atomistic systems. The essentials in the code implementation arc explained. The method is successfully applied to deforming nanorods of sub-micron size in both two and three dimensions, it) show that it is ready for dynamics simulation of meso-scale, three-dimensional realistic systems. [doi: 10.2320/matertrans.MB200813]
引用
收藏
页码:2541 / 2549
页数:9
相关论文
共 50 条
  • [21] A coarse grid correction to domain decomposition based preconditioners for meso-scale simulation of concrete
    Wu Jian-ping
    Song Jun-qiang
    Zhang Wei-min
    Ma Huai-fa
    PROGRESS IN INDUSTRIAL AND CIVIL ENGINEERING, PTS. 1-5, 2012, 204-208 : 4683 - +
  • [22] Protocol for the development of coarse-grained structures for macromolecular simulation using GROMACS
    Niranjan, Vidya
    Rao, Purushotham
    Uttarkar, Akshay
    Kumar, Jitendra
    PLOS ONE, 2023, 18 (08):
  • [23] Interactive Meso-scale Simulation of Skyscapes
    Vimont, Ulysse
    Gain, James
    Lastic, Maud
    Cordonnier, Guillaume
    Abiodun, Babatunde
    Cani, Marie-Paule
    COMPUTER GRAPHICS FORUM, 2020, 39 (02) : 585 - 596
  • [24] Coarse-grained simulation method for performance evaluation a of shared memory system
    Kawahara, Ryo
    Nakamura, Kenta
    Ono, Kouichi
    Nakada, Takeo
    Sakamoto, Yoshifumi
    2011 16TH ASIA AND SOUTH PACIFIC DESIGN AUTOMATION CONFERENCE (ASP-DAC), 2011,
  • [25] Research on scale effect of coarse-grained materials
    Wang Yong-ming
    Zhu Sheng
    Ren Jin-ming
    Peng Peng
    Xu Xue-yong
    ROCK AND SOIL MECHANICS, 2013, 34 (06) : 1799 - +
  • [26] Analysis of scale effect of coarse-grained materials
    Wu Li-qiang
    Zhu Sheng
    Zhang Xiao-hua
    Chen Wen-liang
    ROCK AND SOIL MECHANICS, 2016, 37 (08) : 2187 - 2197
  • [27] Research on scale effect of coarse-grained materials
    Wang, Y.-M. (wang_ym2@ecidi.com), 1799, Academia Sinica (34):
  • [28] A coarse-grained simulation for the folding of molybdenum disulphide
    Wang, Cui-Xia
    Zhang, Chao
    Jiang, Jin-Wu
    Rabczuk, Timon
    JOURNAL OF PHYSICS D-APPLIED PHYSICS, 2016, 49 (02)
  • [29] REACH: A program for coarse-grained biomolecular simulation
    Moritsugu, Kei
    Smith, Jeremy C.
    COMPUTER PHYSICS COMMUNICATIONS, 2009, 180 (07) : 1188 - 1195
  • [30] Coarse-grained molecular simulation of interacting dendrimers
    Tian, Wen-de
    Ma, Yu-qiang
    SOFT MATTER, 2011, 7 (02) : 500 - 505