Anabel: An Online Tool for the Real-Time Kinetic Analysis of Binding Events

被引:29
|
作者
Kraemer, Stefan D. [1 ,2 ]
Woehrle, Johannes [1 ,3 ]
Rath, Christin [1 ,2 ,4 ,5 ]
Roth, Guenter [1 ,2 ,4 ,5 ]
机构
[1] Univ Freiburg, Ctr Biol Syst Anal ZBSA, Habsburgerstr 49, D-79104 Freiburg, Germany
[2] Univ Freiburg, Fac Biol, Freiburg, Germany
[3] Univ Freiburg, Dept Microsyst Engn IMTEK, Freiburg, Germany
[4] BioCopy GmbH, Freiburg, Germany
[5] Univ Freiburg, BIOSS Ctr Biol Signaling Studies, Freiburg, Germany
来源
BIOINFORMATICS AND BIOLOGY INSIGHTS | 2019年 / 13卷
关键词
SPR; SCORE; BLI; binding kinetics; binding events; software; LABEL-FREE DETECTION; BIOSENSOR; INTERFEROMETRY;
D O I
10.1177/1177932218821383
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Anabel (Analysis of binding events + l) is an open source online software tool (www.skscience.org/anabel) for convenient analysis of molecular binding interactions. Currently, exported datasets from Biacore (surface plasmon resonance [SPR], ForteBio (biolayer interference [BLI]), and Biametrics (single color reflectometry [SCORE]) can be uploaded and evaluated in Anabel using 2 different evaluation methods. Moreover, a universal data template format is provided to upload any other binding dataset to Anabel. This enables an easier comparison of different analysis methods for all users. Furthermore, a guide was established in Anabel to help inexperienced users to obtain optimal results. In addition, expert features can be used to optimize and control the fit of the binding model to the measured data. We tried to make the process of fitting and evaluating as easy as possible through the use of an intuitive user interface. At the end of every analysis, a single excel file, containing all results and graphs of the performed analysis, can be downloaded.
引用
收藏
页数:10
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