Sequence-Specific Unusual (1→2)-Type Helical Turns in α/β-Hybrid Peptides

被引:73
|
作者
Prabhakaran, Panchami [2 ]
Kale, Sangram S. [2 ]
Puranik, Vedavati G. [3 ]
Rajamohanan, P. R. [1 ]
Chetina, Olga [4 ]
Howard, Judith A. K. [4 ]
Hofmann, Hans-Joerg [5 ]
Sanjayan, Gangadhar J. [2 ]
机构
[1] Natl Chem Lab, Cent NMR Facil, Pune 411008, Maharashtra, India
[2] Natl Chem Lab, Div Organ Chem, Pune 411008, Maharashtra, India
[3] Natl Chem Lab, Ctr Mat Characterizat, Pune 411008, Maharashtra, India
[4] Univ Durham, Dept Chem, Durham DH1 3L, England
[5] Univ Leipzig, Fak Biowissensch Pharm & Psychol, Inst Biochem, D-04103 Leipzig, Germany
关键词
D O I
10.1021/ja804297f
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
This article describes novel conformationally ordered (alpha/beta-hybrid peptides consisting of repeating L-proline-anthranilic acid building blocks. These oligomers adopt a compact, right-handed helical architecture determined by the intrinsic conformational preferences of the individual amino acid residues. The striking feature of these oligomers is their ability to display an unusual periodic pseudo beta-turn network of nine-membered hydrogen-bonded rings formed in the forward direction of the sequence by 1-->2 amino acid interactions both in solid-state and in solution. Conformational investigations of several of these oligomers by single-crystal X-ray diffraction, solution-state NMR, and ab initio MO theory suggest that the characteristic steric and dihedral angle restraints exerted by proline are essential for stabilizing the unusual pseudo beta-turn network found in these oligomers. Replacing proline by the conformationally flexible analogue alanine (Ala) or by the conformationally more constrained alpha-amino isobutyric acid (Aib) had an adverse effect on the stabilization of this structural architecture. These findings increase the potential to design novel secondary structure elements profiting from the steric and dihedral angle constraints of the amino acid constituents and help to augment the conformational space available for synthetic oligomer design with diverse backbone structures.
引用
收藏
页码:17743 / 17754
页数:12
相关论文
共 50 条
  • [21] ANTIBODIES AGAINST SEQUENCE-SPECIFIC PEPTIDES CORRESPONDING TO THE DOPAMINE (DA) D2 RECEPTORS
    LEW, JY
    LEE, KY
    GOLDSTEIN, M
    FASEB JOURNAL, 1991, 5 (04): : A854 - A854
  • [22] SEQUENCE-SPECIFIC CLEAVAGE OF RNA BY A HYBRID RIBONUCLEASE-H
    NAKAI, C
    KONISHI, A
    KOMATSU, Y
    INOUE, H
    OHTSUKA, E
    KANAYA, S
    FEBS LETTERS, 1994, 339 (1-2) : 67 - 72
  • [23] SEQUENCE-SPECIFIC DEGRADATION OF A DNA-RNA HYBRID BY BLEOMYCIN
    LEE, JS
    KOZARICH, JW
    STUBBE, J
    BIOCHEMISTRY, 1990, 29 (08) : 2198 - 2198
  • [24] SEQUENCE-SPECIFIC CLEAVAGE OF DOUBLE-HELICAL DNA - N-BROMOACETYLDISTAMYCIN
    BAKER, BF
    DERVAN, PB
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1985, 107 (26) : 8266 - 8268
  • [25] Effect of ligand sequence-specific modification on DNA hybrid catalysis
    Zhou, H.
    Chen, D.
    Bai, J. K.
    Sun, X. L.
    Li, C.
    Qiao, R. Z.
    ORGANIC & BIOMOLECULAR CHEMISTRY, 2017, 15 (32) : 6738 - 6745
  • [26] GENERATION OF A HYBRID SEQUENCE-SPECIFIC SINGLE-STRANDED DEOXYRIBONUCLEASE
    COREY, DR
    SCHULTZ, PG
    SCIENCE, 1987, 238 (4832) : 1401 - 1403
  • [27] Sequence-specific 2-cyanobenzothiazole ligation
    Ramil, Carlo P.
    An, Peng
    Yu, Zhipeng
    Lin, Qing
    Journal of the American Chemical Society, 2016, 138 (17): : 5499 - 5502
  • [28] Sequence-Specific 2-Cyanobenzothiazole Ligation
    Ramil, Carlo P.
    An, Peng
    Yu, Zhipeng
    Lin, Qing
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2016, 138 (17) : 5499 - 5502
  • [29] SEQUENCE-SPECIFIC INTERACTION OF TAT PROTEIN AND TAT PEPTIDES WITH THE TRANSACTIVATION-RESPONSIVE SEQUENCE ELEMENT OF HUMAN-IMMUNODEFICIENCY-VIRUS TYPE-1 INVITRO
    CORDINGLEY, MG
    LAFEMINA, RL
    CALLAHAN, PL
    CONDRA, JH
    SARDANA, VV
    GRAHAM, DJ
    NGUYEN, TM
    LEGROW, K
    GOTLIB, L
    SCHLABACH, AJ
    COLONNO, RJ
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1990, 87 (22) : 8985 - 8989
  • [30] The sequence-specific association of the ETS domain of murine PU.1 with DNA exhibits unusual energetics
    Poon, GMK
    Gross, P
    Macgregor, RB
    BIOCHEMISTRY, 2002, 41 (07) : 2361 - 2371