Explicet: graphical user interface software for metadata-driven management, analysis and visualization of microbiome data

被引:215
|
作者
Robertson, Charles E. [1 ,2 ]
Harris, J. Kirk [2 ,3 ]
Wagner, Brandie D. [2 ,4 ]
Granger, David [5 ]
Browne, Kathy [5 ]
Tatem, Beth [5 ]
Feazel, Leah M. [6 ]
Park, Kristin [1 ]
Pace, Norman R. [1 ]
Frank, Daniel N. [2 ,6 ]
机构
[1] Univ Colorado, Dept Mol Cellular & Dev Biol, Boulder, CO 80309 USA
[2] Univ Colorado Microbiome Res Consortium, Aurora, CO 80045 USA
[3] Univ Colorado Anschutz Med Campus, Dept Pediat, Aurora, CO 80045 USA
[4] Colorado Sch Publ Hlth, Dept Biostat & Informat, Aurora, CO 80045 USA
[5] Incubix Inc, Boulder, CO 80301 USA
[6] Univ Colorado Anschutz Med Campus, Dept Med, Aurora, CO 80045 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1093/bioinformatics/btt526
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Studies of the human microbiome, and microbial community ecology in general, have blossomed of late and are now a burgeoning source of exciting research findings. Along with the advent of next-generation sequencing platforms, which have dramatically increased the scope of microbiome-related projects, several high-performance sequence analysis pipelines (e. g. QIIME, MOTHUR, VAMPS) are now available to investigators for microbiome analysis. The subject of our manuscript, the graphical user interface-based Explicet software package, fills a previously unmet need for a robust, yet intuitive means of integrating the outputs of the software pipelines with user-specified metadata and then visualizing the combined data.
引用
收藏
页码:3100 / 3101
页数:2
相关论文
共 50 条
  • [31] APEX_SCOPE: A Graphical User Interface for Visualization of Multi-Modal Data in Inter-Disciplinary Studies
    Kanbar, Lara J.
    Shalish, Wissam
    Precup, Doina
    Brown, Karen
    Sant'Anna, Guilherme M.
    Kearney, Robert E.
    2017 39TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY (EMBC), 2017, : 2602 - 2605
  • [32] MethLAB A graphical user interface package for the analysis of array-based DNA methylation data
    Kilaru, Varun
    Barfield, Richard T.
    Schroeder, James W.
    Smith, Alicia K.
    Conneely, Karen N.
    EPIGENETICS, 2012, 7 (03) : 225 - 229
  • [33] A Data Analysis Graphical User Interface for RoboCup 2D Soccer Simulation League
    Pereira, Felipe N. A.
    Soares, Mateus F. B.
    Banos, Edna N. S.
    2020 XVIII LATIN AMERICAN ROBOTICS SYMPOSIUM, 2020 XII BRAZILIAN SYMPOSIUM ON ROBOTICS AND 2020 XI WORKSHOP OF ROBOTICS IN EDUCATION (LARS-SBR-WRE 2020), 2020, : 264 - 268
  • [34] Development of reusable software components for monitoring data management, visualization and analysis
    Inaudi, D
    SMART STRUCTURES AND MATERIALS 2002: SMART SYSTEMS FOR BRIDGES, STRUCTURES, AND HIGHWAYS, 2002, 4696 : 10 - 16
  • [35] Redesigning Graphical User Interface of Open-Source Geospatial Software in a Community-Driven Way: A Case Study of GRASS GIS
    Karlovska, Linda
    Petrasova, Anna
    Petras, Vaclav
    Landa, Martin
    ISPRS INTERNATIONAL JOURNAL OF GEO-INFORMATION, 2023, 12 (09)
  • [36] Enabling user-driven rule management in event data analysis
    Chen, Weisi
    Rabhi, Fethi A.
    INFORMATION SYSTEMS FRONTIERS, 2016, 18 (03) : 511 - 528
  • [37] Enabling user-driven rule management in event data analysis
    Weisi Chen
    Fethi A. Rabhi
    Information Systems Frontiers, 2016, 18 : 511 - 528
  • [38] Pulser: user-friendly, graphical user-interface based software for controlling stimuli during data acquisition with Spike2 for windows
    Lidierth, M
    JOURNAL OF NEUROSCIENCE METHODS, 2005, 141 (02) : 243 - 250
  • [39] Gene array analyzer software: a multi-user platform for management, analysis and visualization of gene expression data from replicate experiments
    Masseroli, M
    Cerveri, P
    Pelicci, PG
    Pinciroli, F
    Alcalay, M
    MINERVA BIOTECNOLOGICA, 2003, 15 (04) : 207 - 216
  • [40] Context-and data-driven satisfaction analysis of user interface adaptations based on instant user feedback
    Yigitbas, Enes
    Hottung, André
    Rojas, Sebastian Mansfield
    Anjorin, Anthony
    Sauer, Stefan
    Engels, Gregor
    Proceedings of the ACM on Human-Computer Interaction, 2019, 3 (EICS)