dietr: an R package for calculating fractional trophic levels from quantitative and qualitative diet data

被引:10
|
作者
Borstein, Samuel R. [1 ]
机构
[1] Univ Michigan, Dept Ecol & Evolutionary Biol, Biol Sci Bldg 2020, Ann Arbor, MI 48109 USA
基金
美国国家科学基金会;
关键词
Trophic ecology; Stomach contents analysis; Feeding; Electivity; R package; FishBase; STABLE-ISOTOPE; FORAGE RATIO; FOOD; POSITION; CONSEQUENCES; SELECTION; OMNIVORY; ECOPATH; HISTORY; MODELS;
D O I
10.1007/s10750-020-04417-5
中图分类号
Q17 [水生生物学];
学科分类号
071004 ;
摘要
This article introduces an R package,dietr, which calculates fractional trophic levels from quantitative diet item and qualitative food item data following the routine implemented inTrophLabwithin the open source R environment.dietris easy to use and can quickly calculate trophic levels for many diet records. In addition to calculating trophic levels following theTrophLabroutines, users can also specify a taxonomic hierarchy and estimate trophic levels at multiple taxonomic levels in a single call of a function. Additionally,dietrworks well with FishBase data obtained in R usingrfishbaseand comes with pre-made databases of prey trophic levels that users can utilize for estimating trophic levels.dietrcan also calculate several prey electivity indices. I provide information ondietr's performance and provide a use case example of howdietrcan be used on an empirical dataset. Trophic levels for hundreds of specimens can be calculated in a few seconds and the flexibility ofdietr's input allows users to easily calculate trophic levels from their own data.
引用
收藏
页码:4285 / 4294
页数:10
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