Real-Time Analysis and Visualization for Single-Molecule Based Super-Resolution Microscopy

被引:100
|
作者
Kechkar, Adel [1 ,2 ]
Nair, Deepak [1 ,2 ]
Heilemann, Mike [3 ]
Choquet, Daniel [1 ,2 ]
Sibarita, Jean-Baptiste [1 ,2 ]
机构
[1] Univ Bordeaux, Interdisciplinary Inst Neurosci, Bordeaux, France
[2] CNRS, UMR 5297, Bordeaux, France
[3] Goethe Univ Frankfurt, Inst Phys & Theoret Chem, Frankfurt, Germany
来源
PLOS ONE | 2013年 / 8卷 / 04期
关键词
PHOTOACTIVATION LOCALIZATION MICROSCOPY; OPTICAL RECONSTRUCTION MICROSCOPY; ACCURATE; SOFTWARE; TRACKING;
D O I
10.1371/journal.pone.0062918
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Accurate multidimensional localization of isolated fluorescent emitters is a time consuming process in single-molecule based super-resolution microscopy. We demonstrate a functional method for real-time reconstruction with automatic feedback control, without compromising the localization accuracy. Compatible with high frame rates of EM-CCD cameras, it relies on a wavelet segmentation algorithm, together with a mix of CPU/GPU implementation. A combination with Gaussian fitting allows direct access to 3D localization. Automatic feedback control ensures optimal molecule density throughout the acquisition process. With this method, we significantly improve the efficiency and feasibility of localization-based super-resolution microscopy.
引用
收藏
页数:10
相关论文
共 50 条
  • [21] Minimizing Structural Bias in Single-Molecule Super-Resolution Microscopy
    Mazidi, Hesam
    Lu, Jin
    Nehorai, Arye
    Lew, Matthew D.
    SCIENTIFIC REPORTS, 2018, 8
  • [22] Axial plane single-molecule super-resolution microscopy of whole cells
    An, Sha
    Ziegler, Karl Ferdinand
    Zhang, Peiyi
    Wang, Yu
    Kwok, Tim
    Xu, Fan
    Bi, Cheng
    Matosevic, Sandro
    Yin, Peng
    Li, Tongcang
    Huang, Fang
    BIOMEDICAL OPTICS EXPRESS, 2020, 11 (01) : 461 - 479
  • [23] A Review of Super-Resolution Single-Molecule Localization Microscopy Cluster Analysis and Quantification Methods
    Khater, Ismail M.
    Nabi, Ivan Robert
    Hamarneh, Ghassan
    PATTERNS, 2020, 1 (03):
  • [24] Single-Molecule Sensing by Grating-based Spectrally Resolved Super-Resolution Microscopy
    Kim, Geun-ho
    Chung, Jinkyoung
    Park, Hyunbum
    Kim, Doory
    BULLETIN OF THE KOREAN CHEMICAL SOCIETY, 2021, 42 (02) : 270 - 278
  • [26] Single-molecule analysis of fluorescent carbon dots towards localization-based super-resolution microscopy
    Verma, Navneet C.
    Khan, Syamantak
    Nandi, Chayan K.
    METHODS AND APPLICATIONS IN FLUORESCENCE, 2016, 4 (04):
  • [27] Programmable DNA-based super-resolution microscopy for spatial and single-molecule proteomics
    Dai, Mingjie
    BIOPHYSICAL JOURNAL, 2024, 123 (03) : 432A - 432A
  • [28] Functioning Nanomachines Seen in Real-Time in Living Bacteria Using Single-Molecule and Super-Resolution Fluorescence Imaging
    Chiu, Sheng-Wen
    Leake, Mark C.
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2011, 12 (04) : 2518 - 2542
  • [29] Single-molecule super-resolution imaging in bacteria
    Cattoni, D. I.
    Fiche, J. B.
    Noellmann, M.
    CURRENT OPINION IN MICROBIOLOGY, 2012, 15 (06) : 758 - 763
  • [30] Introduction: Super-Resolution and Single-Molecule Imaging
    Biteen, Julie
    Willets, Katherine A.
    CHEMICAL REVIEWS, 2017, 117 (11) : 7241 - 7243