Noncovalent interactions of nucleic acid bases with fullerene C60 and short carbon nanotube models: a dispersion-corrected DFT study

被引:6
|
作者
Basiuk, Vladimir A. [1 ]
Andrade-Salas, Arturo [1 ]
机构
[1] Univ Nacl Autonoma Mexico, Inst Ciencias Nucl, Mexico City, DF, Mexico
关键词
Nucleic acid bases; fullerene C-60; carbon nanotubes; noncovalent interactions; density functional theory; dispersion-corrected calculations; DNA NUCLEOBASES; BINDING-ENERGY; GRAPHENE; STACKING; CYTOSINE; COMPLEX; FUNCTIONALIZATION; INSERTION; NI(II); SWCNT;
D O I
10.1080/08927022.2016.1246735
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
In the present work, we studied theoretically the noncovalent interaction of six nucleobases (NBs), namely uracil (U), thymine (T), cytosine (C), 5-methylcytosine (m(5)C), adenine (A) and guanine (G), with fullerene C-60 and two closed-end SWNT models of armchair (ANT) and zigzag (ZNT) chirality. The calculations were performed using the functional PBE of general gradient approximation, empirical dispersion correction by Grimme, in conjunction with the DNP double numerical basis set. For comparison purposes, two sets of calculations were carried out: the first one, under vacuum conditions, and the second one, in aqueous medium. We analysed the computed geometries and binding energies for NB+CNC complexes, the plots of HOMO and LUMO orbitals and the values of corresponding HOMO-LUMO gap energies. In particular, we found that under vacuum conditions, the interaction strength decreases in the order of G>m(5)C>A>C>T>U for C-60 and ZNT, and G>A>m(5)C>C>T>U for ANT. In aqueous medium, the binding energies decrease in the order of G>A>m(5)C>T>C>U for C-60 and ANT, and G>A>T>m(5)C>C>U for ZNT.
引用
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页码:205 / 212
页数:8
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