Graph-Theoretic Analysis of Monomethyl Phosphate Clustering in Ionic Solutions

被引:47
|
作者
Han, Kyungreem [1 ]
Venable, Richard M. [1 ]
Bryant, Anne-Marie [2 ]
Legacy, Christopher J. [2 ]
Shen, Rong [3 ]
Li, Hui [3 ]
Roux, Benoit [3 ]
Gericke, Arne [2 ]
Pastor, Richard W. [1 ]
机构
[1] NHLBI, Lab Computat Biol, NIH, Bldg 10, Bethesda, MD 20892 USA
[2] Worcester Polytech Inst, Dept Chem & Biochem, Worcester, MA 01609 USA
[3] Univ Chicago, Dept Biochem & Mol Biol, 920 E 58Th St, Chicago, IL 60637 USA
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2018年 / 122卷 / 04期
基金
美国国家卫生研究院; 美国国家科学基金会;
关键词
PHOSPHATIDYLINOSITOL 4,5-BISPHOSPHATE; MOLECULAR-DYNAMICS; FORCE-FIELD; PHYSICAL-CHEMISTRY; MEMBRANE; CALCIUM; BINDING; LIPIDS; SIMULATIONS; IONIZATION;
D O I
10.1021/acs.jpcb.7b10730
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
All-atom molecular dynamics simulations combined with graph-theoretic analysis reveal that clustering of monomethyl phosphate dianion (MMP2-) is strongly influenced by the types and combinations of cations in the aqueous solution. Although Ca2+ promotes the formation of stable and large MMP2- clusters, K+ alone does not. Nonetheless, clusters are larger and their link lifetimes are longer in mixtures of K+ and Ca2+. This "synergistic" effect depends sensitively on the Lennard-Jones interaction parameters between Ca2+ and the phosphorus oxygen and correlates with the hydration of the clusters. The pronounced MMP2- clustering effect of Ca2+ in the presence of K+ is confirmed by Fourier transform infrared spectroscopy. The characterization of the cation-dependent clustering of MMP2- provides a starting point for understanding cation-dependent clustering of phosphoinositides in cell membranes.
引用
收藏
页码:1484 / 1494
页数:11
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