Self consistent-charge density-functional tight-binding method for simulations of biological molecules

被引:0
|
作者
Elstner, M [1 ]
Porezag, D [1 ]
Seifert, G [1 ]
Frauenheim, T [1 ]
Suhai, S [1 ]
机构
[1] Univ Gesamthsch Paderborn, Fachbereich Phys, D-33098 Paderborn, Germany
来源
关键词
D O I
暂无
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
We apply a self-consistent charge tight-binding scheme to biomolecules. This method has been shown to give a reliable description of reaction energies, geometries and vibrational frequencies of small organic molecules. We discuss the performance of this method for model peptides and non-bonding interactions in biologically relevant molecular complexes. A comparison with semi-empirical methods and ab initio calculations will be given for DNA base pair H-bonding and stacking interactions.
引用
收藏
页码:541 / 546
页数:6
相关论文
共 50 条
  • [41] Density-functional tight binding - an approximate density-functional theory method
    Seifert, Gotthard
    Joswig, Jan-Ole
    WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, 2012, 2 (03) : 456 - 465
  • [42] The vibrational spectra of protonated water clusters: A benchmark for self-consistent-charge density-functional tight binding
    Yu, Haibo
    Cui, Qiang
    JOURNAL OF CHEMICAL PHYSICS, 2007, 127 (23):
  • [43] Self-Consistent-Charge Density-Functional Tight-Binding (SCC-DFTB) Parameters for Ceria in 0D to 3D
    Kullgren, Jolla
    Wolf, Matthew J.
    Hermansson, Kersti
    Koehler, Christof
    Aradi, Balint
    Frauenheim, Thomas
    Broqvist, Peter
    JOURNAL OF PHYSICAL CHEMISTRY C, 2017, 121 (08): : 4593 - 4607
  • [44] A Complete Set of Self-Consistent Charge Density-Functional Tight-Binding Parametrization of Zinc Chalcogenides (ZnX; X=O, S, Se, and Te)
    Saha, Supriya
    Pal, Sougata
    Sarkar, Pranab
    Rosa, A. L.
    Frauenheim, Th.
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2012, 33 (12) : 1165 - 1178
  • [45] Density-functional based tight-binding calculations on thiophene polymorphism
    Widany, J
    Daminelli, G
    Di Carlo, A
    Lugli, P
    VLSI DESIGN, 2001, 13 (1-4) : 393 - 397
  • [46] Density-functional based tight-binding modelling of ZnO structures
    Fisker, Christian
    Pedersen, Thomas G.
    PHYSICA STATUS SOLIDI B-BASIC SOLID STATE PHYSICS, 2009, 246 (02): : 354 - 360
  • [47] Electron density from the fragment molecular orbital method combined with density-functional tight-binding
    Fedorov, Dmitri G.
    CHEMICAL PHYSICS LETTERS, 2021, 780
  • [48] Multipole Expansion of Atomic Electron Density Fluctuation Interactions in the Density-Functional Tight-Binding Method
    Vuong, Van-Quan
    Aradi, Balint
    Niklasson, Anders M. N.
    Cui, Qiang
    Irle, Stephan
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2023, 19 (21) : 7592 - 7605
  • [49] An Improved Self-Consistent-Charge Density-Functional Tight-Binding (SCC-DFTB) Set of Parameters for Simulation of Bulk and Molecular Systems Involving Titanium
    Dolgonos, Grygoriy
    Aradi, Balint
    Moreira, Ney H.
    Frauenheim, Thomas
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2010, 6 (01) : 266 - 278
  • [50] The treatment of solvation by a generalized born model and a self-consistent charge-density functional theory-based tight-binding method
    Xie, L
    Liu, HY
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2002, 23 (15) : 1404 - 1415