Identification of candidate genes for lung cancer somatic mutation test kits

被引:17
|
作者
Chen, Yong [1 ]
Shi, Jian-Xin [1 ]
Pan, Xu-Feng [1 ]
Feng, Jian [1 ]
Zhao, Heng [1 ]
机构
[1] Shanghai Chest Hosp, Thorac Dept, Shanghai 200030, Peoples R China
关键词
Lung cancer; Next-generation sequencing; Somatic mutation kit; COSMIC; RECEPTOR TYROSINE KINASE; PHASE-II TRIAL; GEFITINIB; EGFR; RESISTANCE; INHIBITORS; ERLOTINIB; THERAPY; CATALOG;
D O I
10.1590/S1415-47572013000300022
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Over the past three decades, mortality from lung cancer has sharply and continuously increased in China, ascending to the first cause of death among all types of cancer. The ability to identify the actual sequence of gene mutations may help doctors determine which mutations lead to precancerous lesions and which produce invasive carcinomas, especially using next-generation sequencing (NGS) technology. In this study, we analyzed the latest lung cancer data in the COSMIC database, in order to find genomic "hotspots" that are frequently mutated in human lung cancer genomes. The results revealed that the most frequently mutated lung cancer genes are EGFR, KRAS and TP53. In recent years, EGFR and KRAS lung cancer test kits have been utilized for detecting lung cancer patients, but they presented many disadvantages, as they proved to be of low sensitivity, labor-intensive and time-consuming. In this study, we constructed a more complete catalogue of lung cancer mutation events including 145 mutated genes. With the genes of this list it may be feasible to develop a NGS kit for lung cancer mutation detection.
引用
收藏
页码:455 / 464
页数:10
相关论文
共 50 条
  • [31] Identification of key candidate genes for pancreatic cancer by bioinformatics analysis
    Lv, Kui
    Yang, Jianying
    Sun, Junfeng
    Guan, Jianguo
    EXPERIMENTAL AND THERAPEUTIC MEDICINE, 2019, 18 (01) : 451 - 458
  • [32] Somatic mutation of the Caspase-5 gene in human lung cancer
    Hosomi, Y
    Gemma, A
    Hosoya, Y
    Nara, M
    Okano, T
    Takenaka, K
    Yoshimura, A
    Koizumi, K
    Shimizu, K
    Kudoh, S
    INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE, 2003, 12 (04) : 443 - 446
  • [33] novel somatic FGFR3 mutation in primary lung cancer
    Shinmura, Kazuya
    Kato, Hisami
    Matsuura, Shun
    Inoue, Yusuke
    Igarashi, Hisaki
    Nagura, Kiyoko
    Nakamura, Satoki
    Maruyama, Kyoko
    Tajima, Mari
    Funai, Kazuhito
    Ogawa, Hiroshi
    Tanahashi, Masayuki
    Niwa, Hiroshi
    Sugimura, Haruhiko
    ONCOLOGY REPORTS, 2014, 31 (03) : 1219 - 1224
  • [34] Genetic Analysis of Lung Cancer and the Germline Impact on Somatic Mutation Burden
    Gabriel, Aurelie A. G.
    Atkins, Joshua R.
    Penha, Ricardo C. C.
    Smith-Byrne, Karl
    Gaborieau, Valerie
    Voegele, Catherine
    Abedi-Ardekani, Behnoush
    Milojevic, Maja
    Olaso, Robert
    Meyer, Vincent
    Boland, Anne
    Deleuze, Jean Francois
    Zaridze, David
    Mukeriya, Anush
    Swiatkowska, Beata
    Janout, Vladimir
    Schejbalova, Miriam
    Mates, Dana
    Stojsic, Jelena
    Ognjanovic, Miodrag
    Witte, John S.
    Rashkin, Sara R.
    Kachuri, Linda
    Hung, Rayjean J.
    Kar, Siddhartha
    Brennan, Paul
    Sertier, Anne-Sophie
    Ferrari, Anthony
    Viari, Alain
    Johansson, Mattias
    Amos, Christopher, I
    Foll, Matthieu
    McKay, James D.
    JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE, 2022, 114 (08): : 1159 - 1166
  • [35] Identification of SNPs Associated with Somatic Cell Score in Candidate Genes in Italian Holstein Friesian Bulls
    Moretti, Riccardo
    Soglia, Dominga
    Chessa, Stefania
    Sartore, Stefano
    Finocchiaro, Raffaella
    Rasero, Roberto
    Sacchi, Paola
    ANIMALS, 2021, 11 (02): : 1 - 12
  • [36] SOMATIC MUTATION AND RECOMBINATION TEST IN DROSOPHILA
    GRAF, U
    FREI, H
    JUON, H
    WURGLER, FE
    ENVIRONMENTAL MUTAGENESIS, 1984, 6 (03): : 462 - 462
  • [37] Novel somatic and germline mutations in cancer candidate genes in glioblastoma, melanoma, and pancreatic carcinoma
    Fonnet, Bleeker E.
    Balakrishnan, Asha
    Lambda, Simona
    Rodolfo, Monica
    Daniotti, Maria
    Scarpa, Aldo
    Van Tilborg, Angela A.
    Leenstra, Sieger
    Zanon, Carlo
    Bardelli, Alberto
    MOLECULAR CANCER THERAPEUTICS, 2007, 6 (12) : 3487S - 3487S
  • [38] Novel somatic and germline mutations in cancer candidate genes in glioblastoma, melanoma, and pancreatic carcinoma
    Balakrishnan, Asha
    Bleeker, Fonnet E.
    Lamba, Simona
    Rodolfo, Monica
    Daniotti, Maria
    Scarpa, Aldo
    van Tilborg, Angela A.
    Leenstra, Sieger
    Zanon, Carlo
    Bardelli, Alberto
    CANCER RESEARCH, 2007, 67 (08) : 3545 - 3550
  • [39] SomInaClust: detection of cancer genes based on somatic mutation patterns of inactivation and clustering
    Jimmy Van den Eynden
    Ana Carolina Fierro
    Lieven PC Verbeke
    Kathleen Marchal
    BMC Bioinformatics, 16
  • [40] SomInaClust: detection of cancer genes based on somatic mutation patterns of inactivation and clustering
    Van den Eynden, Jimmy
    Fierro, Ana Carolina
    Verbeke, Lieven P. C.
    Marchal, Kathleen
    BMC BIOINFORMATICS, 2015, 16