Quantification of Legionella pneumophila by real-time quantitative PCR from samples with humic acid and ferric ion

This study determined and overcame the influences of humic acid (HA) and/or ferric ion (Fe) on quantification of Legionella pneumophila by real-time quantitative PCR (qPCR). Four commonly used DNA isolation methods, QiAamp DNA Mini Kit (Q), Q with Sepharose 4B gel column (Q/G), freeze-thaw/phenol-chloroform lysis (FT-PC), and FT-PC/G, were adopted to isolate L pneumophila DNA from samples containing Fe alone (0-30 mg l(-1)) or Fe/HA (0/0-3/100 mg l(-1)). Among the four DNA isolation methods, Q removed HA effectively and obtained the greatest DNA yield regardless of Fe and HA concentration (P<0.05). For samples containing Fe (0.3-3 mg l(-1)) or Fe/HA (0.3/10-3/100 mg l(-1)), qPCR inhibition was found in all isolated DNA, especially in those obtained by Q/G and FT-PC/G. DNA dilution at either 10 or 100 folds reduced qPCR inhibition and increased cell recovery (P<0.05). Under 10-fold dilution, Q acquired the highest concentrations of L. pneumophila determined by qPCR. Consequently, Q with post 10-fold dilution is suggested prior to qPCR for quantifying L. pneumophila from water containing Fe (<= 3 mg l(-1)) or Fe/HA (<= 3/100 mg l(-1)). (C) 2011 Elsevier B.V. All rights reserved.