A DFT study on the vibrational spectroscopy of protoporphyrin IX

被引:9
|
作者
Billes, Ferenc [1 ]
Varady, Balazs [1 ]
机构
[1] Budapest Univ Technol & Econ, Dept Phys Chem & Mat Sci, H-1521 Budapest, Hungary
关键词
protoporphyrin IX; vibrational spectra; quantum chemistry; molecular geometry; normal coordinate analysis; spectrum simulation;
D O I
10.1016/j.saa.2007.08.021
中图分类号
O433 [光谱学];
学科分类号
0703 ; 070302 ;
摘要
Infrared and Raman spectra of protoporphyrin IX were recorded. DFT quantum chemical calculations were performed. Optimised molecular geometry, electric charge distribution, vibrational force constants were computed. The normal coordinate analysis and the scaling of the force constants yielded all the necessary data for the simulation of the infrared and Raman spectra and the potential energy distribution calculations. The result was the interpretation of all vibrational modes of the molecule. Conclusions were drawn from the difficulties arisen during the assignment of the vibrational spectra of such large molecules. (C) 2007 Elsevier B.V. All rights reserved.
引用
收藏
页码:729 / 734
页数:6
相关论文
共 50 条
  • [41] Association between protoporphyrin IX and sarcopenia: a cross sectional study
    Chia-Chun Kao
    Zhe-Yu Yang
    Wei-Liang Chen
    BMC Geriatrics, 21
  • [42] Association between protoporphyrin IX and sarcopenia: a cross sectional study
    Kao, Chia-Chun
    Yang, Zhe-Yu
    Chen, Wei-Liang
    BMC GERIATRICS, 2021, 21 (01) : 384
  • [43] Photodynamic efficiency of protoporphyrin IX: Comparison of endogenous protoporphyrin IX induced by 5-aminolevulinic acid and exogenous porphyrin IX
    Tabata, K
    Ogura, S
    Okura, I
    PHOTOCHEMISTRY AND PHOTOBIOLOGY, 1997, 66 (06) : 842 - 846
  • [44] Characterization of Protoporphyrin IX Species in Vitro Using Fluorescence Spectroscopy and Polar Plot Analysis
    Tene, Kai Wen
    Lee, Sang Hak
    JOURNAL OF PHYSICAL CHEMISTRY B, 2019, 123 (27): : 5832 - 5840
  • [45] SERS and tunneling spectroscopy investigation of iron-protoporphyrin IX adsorbed on a silver tip
    Bizzarri, AR
    Cannistraro, S
    JOURNAL OF PHYSICAL CHEMISTRY B, 2005, 109 (35): : 16571 - 16574
  • [46] A Simple and Rapid Fluorimetric Method for Simultaneous Determination of Protoporphyrin IX and Zinc Protoporphyrin IX in Whole Blood
    Zhou, Pei-Chen
    Huang, Wei
    Zhang, Rong-Bin
    Zou, Zhe-Xiang
    Luo, He-Dong
    Falih, Ali Abbas
    Li, Yao-Qun
    APPLIED SPECTROSCOPY, 2008, 62 (11) : 1268 - 1273
  • [47] The pink pigment prodigiosin: Vibrational spectroscopy and DFT calculations
    Jehlicka, Jan
    Nemec, Ivan
    Varnali, Tereza
    Culka, Adam
    Svatos, Ales
    Frank, Ota
    Oren, Aharon
    Edwards, Howell G. M.
    DYES AND PIGMENTS, 2016, 134 : 234 - 243
  • [48] Vibrational spectroscopy and DFT calculations of N,N′-dicyclohexylcarbodiimide
    Chowdhry, Babur Z.
    Dines, Trevor J.
    Leharne, Stephen A.
    Ryall, John P.
    Shadi, Iqbal T.
    Withnall, Robert
    JOURNAL OF RAMAN SPECTROSCOPY, 2011, 42 (02) : 230 - 238
  • [49] Protoporphyrin IX photodynamic therapy for synovitis
    Kirdaite, G
    Lange, N
    Busso, N
    van den Bergh, H
    Kucera, P
    So, A
    ARTHRITIS AND RHEUMATISM, 2002, 46 (05): : 1371 - 1378
  • [50] Protoporphyrin IX: the Good, the Bad, and the Ugly
    Sachar, Madhav
    Anderson, Karl E.
    Ma, Xiaochao
    JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS, 2016, 356 (02): : 267 - 275