A Statistical Modeling Approach for Tumor-Type Identification in Surgical Neuropathology Using Tissue Mass Spectrometry Imaging

被引:7
|
作者
Gholami, Behnood [1 ,2 ]
Norton, Isaiah [1 ]
Eberlin, Livia S. [3 ]
Agar, Nathalie Y. R. [1 ,4 ]
机构
[1] Harvard Univ, Brigham & Womens Hosp, Sch Med, Dept Neurosurg, Boston, MA 02115 USA
[2] Broad Inst MIT & Harvard, Cambridge, MA 02142 USA
[3] Purdue Univ, Dept Chem, W Lafayette, IN 47907 USA
[4] Harvard Univ, Brigham & Womens Hosp, Sch Med, Dept Radiol, Boston, MA 02115 USA
关键词
Classification; mass spectrometry (MS); neuropathology; statistical model; BIOMARKER DISCOVERY; CLASSIFICATION; DIAGNOSIS;
D O I
10.1109/JBHI.2013.2250983
中图分类号
TP [自动化技术、计算机技术];
学科分类号
0812 ;
摘要
Current clinical practice involves classification of biopsied or resected tumor tissue based on a histopathological evaluation by a neuropathologist. In this paper, we propose a method for computer-aided histopathological evaluation using mass spectrometry imaging. Specifically, mass spectrometry imaging can be used to acquire the chemical composition of a tissue section and, hence, provides a framework to study the molecular composition of the sample while preserving the morphological features in the tissue. The proposed classification framework uses statistical modeling to identify the tumor type associated with a given sample. In addition, if the tumor type for a given tissue sample is unknown or there is a great degree of uncertainty associated with assigning the tumor type to one of the known tumor models, then the algorithm rejects the given sample without classification. Due to the modular nature of the proposed framework, new tumor models can be added without the need to retrain the algorithm on all existing tumor models.
引用
收藏
页码:734 / 744
页数:11
相关论文
共 50 条
  • [21] Using mass spectrometry imaging to map fluxes quantitatively in the tumor ecosystem
    Schwaiger-Haber, Michaela
    Stancliffe, Ethan
    Anbukumar, Dhanalakshmi S.
    Sells, Blake
    Yi, Jia
    Cho, Kevin
    Adkins-Travis, Kayla
    Chheda, Milan G.
    Shriver, Leah P.
    Patti, Gary J.
    NATURE COMMUNICATIONS, 2023, 14 (01)
  • [22] Using mass spectrometry imaging to map fluxes quantitatively in the tumor ecosystem
    Michaela Schwaiger-Haber
    Ethan Stancliffe
    Dhanalakshmi S. Anbukumar
    Blake Sells
    Jia Yi
    Kevin Cho
    Kayla Adkins-Travis
    Milan G. Chheda
    Leah P. Shriver
    Gary J. Patti
    Nature Communications, 14
  • [23] Identification of tumor marker gangliosides for early cancer detection: A mass spectrometry approach
    Culp-Hill, Rachel
    Hill, Collin
    Blackler, Adele
    Ricketts, William
    CANCER RESEARCH, 2024, 84 (06)
  • [24] Laser Desorption Postionization Mass Spectrometry Imaging of Folic Acid Molecules in Tumor Tissue
    Lu, Qiao
    Hu, Yongjun
    Chen, Jiaxin
    Jin, Shan
    ANALYTICAL CHEMISTRY, 2017, 89 (16) : 8238 - 8243
  • [25] Testing for Multivariate Normality in Mass Spectrometry Imaging Data: A Robust Statistical Approach for Clustering Evaluation and the Generation of Synthetic Mass Spectrometry Imaging Data Sets
    Dexter, Alex
    Race, Alan M.
    Styles, Iain B.
    Bunch, Josephine
    ANALYTICAL CHEMISTRY, 2016, 88 (22) : 10893 - 10899
  • [26] Identification of Tissue Microvascular Invasion Biomarkers in Hepatocellular Carcinomas by MALDI Imaging Mass Spectrometry
    Pote, N.
    Alexandrov, T.
    Le Faouder, J.
    Laouirem, S.
    Belghiti, J.
    Camadro, J. M.
    Paradis, V.
    Bedossa, P.
    VIRCHOWS ARCHIV, 2012, 461 : S9 - S10
  • [27] On-Tissue Protein Identification and Imaging by MALDI-Ion Mobility Mass Spectrometry
    Stauber, Jonathan
    MacAleese, Luke
    Franck, Julien
    Claude, Emmanuelle
    Snel, Marten
    Kaletas, Basak Kukrer
    Wiel, Ingrid M. V. D.
    Wisztorski, Maxence
    Fournier, Isabelle
    Heeren, Ron M. A.
    JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2010, 21 (03) : 338 - 347
  • [28] Chemical mapping and cell type differentiation of paraffin-embedded tissue sections using imaging mass spectrometry
    Kulp, Kristen S.
    Knize, Mark G.
    Wu, Kuang Jen J.
    Wu, Ligang
    Seligson, David B.
    Goodglick, Lee D.
    Chia, David
    Tze, Shelia
    Berman, Elena S. F.
    Lu, Xiaochen
    Felton, James S.
    CANCER RESEARCH, 2006, 66 (08)
  • [29] Towards Improving Surgical Margins in Tumour Resection Using Mass Spectrometry Imaging
    Warren, Jade
    Jamzad, Amoon
    Jamaspishvili, Tamara
    Iseman, Rachael
    Syeda, Ayesha
    Kaufmann, Martin
    Rudan, John
    Fichtinger, Gabor
    Berdan, David M.
    Mousavi, Parvin
    2024 IEEE CANADIAN CONFERENCE ON ELECTRICAL AND COMPUTER ENGINEERING, CCECE 2024, 2024, : 554 - 558
  • [30] Detection of immune cell glycosylation as an indicator of metabolic activity in the tumor tissue microenvironment using multimodal mass spectrometry imaging
    Drake, Richard R.
    Radford, Kameisha
    Kittrell, Caroline
    Wallace, Kristin
    Angel, Peggi M.
    CANCER IMMUNOLOGY RESEARCH, 2023, 11 (12)