Evaluation and validation of reference genes in Cymbidium faberi for real-time quantitative PCR

被引:1
|
作者
Tian, Yunfang [1 ,2 ]
Chu, Zhigang [1 ,2 ]
Wang, Linqing [1 ,2 ]
Wang, Huiyu [1 ,2 ]
Yuan, Xiuyun [1 ,2 ]
Wu, Si [1 ,2 ]
Yang, Yuzhen [1 ,2 ]
机构
[1] Zhengzhou Normal Univ, Coll Life Sci, Zhengzhou 450044, Peoples R China
[2] Zhengzhou Key Lab Ornamental & Med Resources Plan, Zhengzhou 450044, Peoples R China
关键词
C; faberi; real-time quantitative PCR; reference genes; RT-PCR; QRT-PCR; TRANSCRIPT NORMALIZATION; HOUSEKEEPING GENES; EXPRESSION; IDENTIFICATION; SELECTION; ARABIDOPSIS;
D O I
10.2144/btn-2022-0025
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
For all organs at all Cymbidium faberi stages, ACT, UBQ3 and GAPDH can be selected as reference genes. For organs of the vegetative stage, UBQ2 and UBQ3 can be chosen for analysis of normalized gene expression. For the bud stage, ACT and UBQ3 can be used for analysis of gene expression. For the full blossom stage, ACT, UBQ3 and UBQ2 can be introduced into relative gene expression analysis. For vegetative organs, UBQ2 and ACT can be used as reference genes. For reproductive organs, ACT, UBQ3 and UBQ2 can be used as a reference for data processing. CfAG1 gene expression is more consistent when UBQ3, GAPDH and ACT are used as reference genes. Method summary To select reference genes in Cymbidium faberi for more accurate quantification of target genes, expression levels of candidate reference genes were detected by real-time quantitative PCR. Expression stability of eight candidate reference genes was evaluated using geNorm and NormFinder software. To further verify stability of the eight candidate reference genes, the expression of CfAG1 was detected.
引用
收藏
页码:171 / 181
页数:11
相关论文
共 50 条
  • [21] Evaluation and Validation of Reliable Reference Genes for Quantitative Real-Time PCR Analysis of the Gene Expression in Macadamia integrifolia
    Yang, Qian
    Yang, Ziping
    Zeng, Hui
    Zou, Minghong
    Song, Ximei
    Wan, Jifeng
    Wang, Zhao
    Chen, Jing
    Luo, Lianfang
    FORESTS, 2024, 15 (11):
  • [22] Selection and Validation of Reference Genes for Quantitative Real-Time PCR Analysis of Development and Tissue-Dependent Flower Color Formation in Cymbidium lowianum
    Dong, Xiu-Mei
    Zhang, Wei
    Zhang, Shi-Bao
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2022, 23 (02)
  • [23] Evaluation of reference genes for real-time quantitative PCR in the marine flavobacterium Zobellia galactanivorans
    Thomas, Francois
    Barbeyron, Tristan
    Michel, Gurvan
    JOURNAL OF MICROBIOLOGICAL METHODS, 2011, 84 (01) : 61 - 66
  • [24] Evaluation of reference genes for quantitative real-time PCR normalization in the scarab beetleHolotrichia oblita
    Xie, Minghui
    Zhong, Yongzhi
    Lin, Lulu
    Zhang, Guangling
    Su, Weihua
    Ni, Wanli
    Qu, Mingjing
    Chen, Haoliang
    PLOS ONE, 2020, 15 (10):
  • [25] Evaluation of reference genes for quantitative real-time PCR in the brain, pituitary, and gonads of songbirds
    Zinzow-Kramer, Wendy M.
    Horton, Brent M.
    Maney, Donna L.
    HORMONES AND BEHAVIOR, 2014, 66 (02) : 267 - 275
  • [26] Selection and validation of reference genes for quantitative real-time PCR in the green microalgae Tetraselmis chui
    Torres, Sonia
    Lama, Carmen
    Mantecon, Lalia
    Flemetakis, Emmanouil
    Infante, Carlos
    PLOS ONE, 2021, 16 (01):
  • [27] Validation of reference genes of grass carp Ctenopharyngodon idellus for the normalization of quantitative real-time PCR
    Xing Ye
    Lili Zhang
    Haiyan Dong
    Yuanyuan Tian
    Haihua Lao
    Junjie Bai
    Lingyun Yu
    Biotechnology Letters, 2010, 32 : 1031 - 1038
  • [28] Identification and validation of reference genes for accurate normalization of real-time quantitative PCR data in kiwifruit
    Ferradas, Yolanda
    Rey, Laura
    Martinez, Oscar
    Rey, Manuel
    Victoria Gonzalez, Ma
    PLANT PHYSIOLOGY AND BIOCHEMISTRY, 2016, 102 : 27 - 36
  • [29] Validation of reference genes for expression analysis by quantitative real-time PCR in Leptinotarsa decemlineata (Say)
    Shi X.-Q.
    Guo W.-C.
    Wan P.-J.
    Zhou L.-T.
    Ren X.-L.
    Ahmat T.
    Fu K.-Y.
    Li G.-Q.
    BMC Research Notes, 6 (1)
  • [30] Validation of reference genes for quantitative real-time PCR in valproic acid rat models of autism
    Jinlong Zhou
    Xiaozheng Zhang
    Junrong Ren
    Ping Wang
    Junfeng Zhang
    Zhaoming Wei
    Yingfang Tian
    Molecular Biology Reports, 2016, 43 : 837 - 847