Best practices in bioinformatics training for life scientists

被引:41
|
作者
Via, Allegra [1 ]
Blicher, Thomas [2 ]
Bongcam-Rudloff, Erik [3 ,4 ]
Brazas, Michelle D.
Brooksbank, Cath
Budd, Aidan
De Las Rivas, Javier [5 ]
Dreyer, Jacqueline [6 ]
Fernandes, Pedro L. [7 ]
van Gelder, Celia [8 ]
Jacob, Joachim
Jimenez, Rafael C.
Loveland, Jane [9 ]
Moran, Federico [10 ]
Mulder, Nicola
Nyroenen, Tommi
Rother, Kristian
Schneider, Maria Victoria
Attwood, Teresa K. [11 ]
机构
[1] Univ Roma La Sapienza, Dept Phys, I-00185 Rome, Italy
[2] Univ Copenhagen, NNF Ctr Prot Res, DK-1168 Copenhagen, Denmark
[3] Swedish Univ Agr Sci, S-90183 Umea, Sweden
[4] Uppsala Univ, Uppsala, Sweden
[5] Canc Res Ctr, Bioinformat & Funct Genom Grp, Salamanca, Spain
[6] EMBL Heidelberg, Heidelberg, Germany
[7] Inst Gulbenkian Ciencias, Gulbenkian Training Programme Bioinformat, Oeiras, Portugal
[8] Radboud Univ Nijmegen, Med Ctr, NL-6525 ED Nijmegen, Netherlands
[9] Wellcome Trust Sanger Inst, HAVANA Team Working Vertebrate Genome Sequence An, Cambridge, England
[10] Univ Complutense Madrid, E-28040 Madrid, Spain
[11] Univ Manchester, Manchester M13 9PL, Lancs, England
基金
英国生物技术与生命科学研究理事会;
关键词
bioinformatics; training; bioinformatics courses; training life scientists; train the trainers;
D O I
10.1093/bib/bbt043
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The mountains of data thrusting from the new landscape of modern high-throughput biology are irrevocably changing biomedical research and creating a near-insatiable demand for training in data management and manipulation and data mining and analysis. Among life scientists, from clinicians to environmental researchers, a common theme is the need not just to use, and gain familiarity with, bioinformatics tools and resources but also to understand their underlying fundamental theoretical and practical concepts. Providing bioinformatics training to empower life scientists to handle and analyse their data efficiently, and progress their research, is a challenge across the globe. Delivering good training goes beyond traditional lectures and resource-centric demos, using interactivity, problem-solving exercises and cooperative learning to substantially enhance training quality and learning outcomes. In this context, this article discusses various pragmatic criteria for identifying training needs and learning objectives, for selecting suitable trainees and trainers, for developing and maintaining training skills and evaluating training quality. Adherence to these criteria may help not only to guide course organizers and trainers on the path towards bioinformatics training excellence but, importantly, also to improve the training experience for life scientists.
引用
收藏
页码:528 / 537
页数:10
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