BioSmalltalk: a pure object system and library for bioinformatics

被引：1

作者：

Morales, Hernan F. ^{[1
]}

Giovambattista, Guillermo ^{[1
]}

机构：

[1] Univ Nacl La Plata, Fac Ciencias Vet, CONICET La Plata, Inst Genet Vet IGEVET, La Plata, Buenos Aires, Argentina

来源：

BIOINFORMATICS | 2013年 / 29卷 / 18期

关键词：

MOLECULAR-BIOLOGY;

D O I：

10.1093/bioinformatics/btt398

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

We have developed BioSmalltalk, a new environment system for pure object-oriented bioinformatics programming. Adaptive end-user programming systems tend to become more important for discovering biological knowledge, as is demonstrated by the emergence of open-source programming toolkits for bioinformatics in the past years. Our software is intended to bridge the gap between bioscientists and rapid software prototyping while preserving the possibility of scaling to whole-system biology applications. BioSmalltalk performs better in terms of execution time and memory usage than Biopython and BioPerl for some classical situations.

引用

页码：2355 / 2356

页数：2

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