Influence of Non-canonical DNA Bases on the Genomic Diversity of Tevenvirinae

被引:3
|
作者
Nikulin, Nikita A. [1 ]
Zimin, Andrei A. [2 ]
机构
[1] Russian Acad Sci, Lab Bacteriophage Biol, GK Skryabin Inst Biochem & Physiol Microorganisms, Pushchino Sci Ctr Biol Res, Pushchino, Russia
[2] Russian Acad Sci, Pushchino Sci Ctr Biol Res, GK Skryabin Inst Biochem & Physiol Microorganisms, Lab Mol Microbiol, Pushchino, Russia
来源
FRONTIERS IN MICROBIOLOGY | 2021年 / 12卷
关键词
Tevenvirinae; phages; non-canonical bases; modified bases; genome diversity;
D O I
10.3389/fmicb.2021.632686
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The Tevenvirinae viruses are some of the most common viruses on Earth. Representatives of this subfamily have long been used in the molecular biology studies as model organisms - since the emergence of the discipline. Tevenvirinae are promising agents for phage therapy in animals and humans, since their representatives have only lytic life cycle and many of their host bacteria are pathogens. As confirmed experimentally, some Tevenvirinae have non-canonical DNA bases. Non-canonical bases can play an essential role in the diversification of closely related viruses. The article performs a comparative and evolutionary analysis of Tevenvirinae genomes and components of Tevenvirinae genomes. A comparative analysis of these genomes and the genes associated with the synthesis of non-canonical bases allows us to conclude that non-canonical bases have a major influence on the divergence of Tevenvirinae viruses within the same habitats. Supposedly, Tevenvirinae developed a strategy for changing HGT frequency in individual populations, which was based on the accumulation of proteins for the synthesis of non-canonical bases and proteins that used those bases as substrates. Owing to this strategy, ancestors of Tevenvirinae with the highest frequency of HGT acquired genes that allowed them to exist in a certain niche, and ancestors with the lowest HGT frequency preserved the most adaptive of those genes. Given the origin and characteristics of genes associated with the synthesis of non-canonical bases in Tevenvirinae, one can assume that other phages may have similar strategies. The article demonstrates the dependence of genomic diversity of closely related Tevenvirinae on non-canonical bases.
引用
收藏
页数:16
相关论文
共 50 条
  • [31] Non-Canonical Gyrotrons
    Zapevalov, V. E.
    RADIOPHYSICS AND QUANTUM ELECTRONICS, 2018, 61 (04) : 272 - 280
  • [32] Canonical and non-canonical adenosinergic pathways
    Ferretti, E.
    Horenstein, A. L.
    Canzonetta, C.
    Costa, F.
    Morandi, F.
    IMMUNOLOGY LETTERS, 2019, 205 : 25 - 30
  • [33] Non-canonical gyrotrons
    Zapevalov, V. E.
    10TH INTERNATIONAL WORKSHOP 2017 STRONG MICROWAVES AND TERAHERTZ WAVES: SOURCES AND APPLICATIONS, 2017, 149
  • [34] Subjects in constructions - Canonical and non-canonical
    Holvoet, Axel
    CONSTRUCTIONS AND FRAMES, 2018, 10 (01) : 98 - 105
  • [35] Canonical and Non-canonical Reelin Signaling
    Bock, Hans H.
    May, Petra
    FRONTIERS IN CELLULAR NEUROSCIENCE, 2016, 10
  • [36] CANONICAL AND NON-CANONICAL NOTCH LIGANDS
    D'Souza, Brendan
    Meloty-Kapella, Laurence
    Weinmaster, Gerry
    NOTCH SIGNALING, 2010, 92 : 73 - 129
  • [37] Non-canonical passives
    Meltzer-Asscher, Aya
    JOURNAL OF LINGUISTICS, 2014, 50 (01) : 231 - 237
  • [38] Non-Canonical Gyrotrons
    V. E. Zapevalov
    Radiophysics and Quantum Electronics, 2018, 61 : 272 - 280
  • [39] The Non-Canonical Gospels
    Jacobs, Andrew S.
    CATHOLIC BIBLICAL QUARTERLY, 2010, 72 (02): : 409 - 410
  • [40] Non-canonical inteins
    Gorbalenya, AE
    NUCLEIC ACIDS RESEARCH, 1998, 26 (07) : 1741 - 1748