π-Stacking effects on the hydrogen bonding capacity of methyl 2-naphthoate

被引:12
|
作者
Akher, Farideh Badichi [1 ]
Ebrahimi, Ali [1 ]
机构
[1] Univ Sistan & Baluchestan, Computat Quantum Chem Lab, Dept Chem, Zahedan, Iran
来源
JOURNAL OF MOLECULAR GRAPHICS & MODELLING | 2015年 / 61卷
关键词
pi-Stacking; Hydrogen bonding; Electrostatic potential; AIM analysis; NPA analysis; MOLECULAR ELECTROSTATIC POTENTIALS; NONCOVALENT INTERACTIONS; AMINO-ACIDS; FUNCTIONALS; ENERGIES; RINGS;
D O I
10.1016/j.jmgm.2015.06.013
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
pi-stacking effects of fused two-ring system of methyl 2-naphthoate (MNP) with benzene derivatives on the CO group, as a hydrogen bond acceptor, has been investigated by the quantum mechanical calculations at the M06-2X/6-311++G(d,p) level of theory. All substituents enhance the stacking interactions relative to the unsubstituted case, where enhancement is higher for electron-withdrawing substituents (EWSs). The hydrogen bonding ability of lone pairs of O* atom of stacked MNP decreases in the presence of strong electron-withdrawing substituents (NO2, NO and CN). The hydrogen bond ability of -CO group of MNP is related to the sum of local minima of electrostatic potentials (Sigma ESPs) observed between stacked rings. The charge transfer (CT) is lower in the presence of EWSs. The study also shows that the interaction energies (Delta E) are linearly dependent on the combination of the sum of electron densities calculated at the bond critical points (BCPs) between the rings (Sigma rho(BCP)) and the sum of electron charge densities calculated at the ring critical points (Sigma rho(RCP)). There are good relationships between the Hammett constant sigma(meta) and the global minimum of electrostatic potential around the O* atom (V-min), the sum of local minima of the electrostatic potentials obtained between stacked rings, and the results of natural population analysis (NPA). An excellent correlation was found between the Delta E values and a combination of the electrostatic (sigma(meta)), resonance/induction (sigma(para)) and dispersion/polarizibility (molar refractivity, MR) substituent constant terms. (C) 2015 Elsevier Inc. All rights reserved.
引用
收藏
页码:115 / 122
页数:8
相关论文
共 50 条
  • [31] Luminescence and Electron Paramagnetic Resonance Studies of the Excited States of a UV Absorber, 2-Methylphenyl 2-Naphthoate
    Kikuchi, Azusa
    Yagi, Mikio
    CHEMISTRY LETTERS, 2009, 38 (08) : 770 - 771
  • [32] Combined Effects of π-π Stacking and Hydrogen Bonding on the (N1) Acidity of Uracil and Hydrolysis of 2′-Deoxyuridine
    Kellie, Jennifer L.
    Navarro-Whyte, Lex
    Carvey, Matthew T.
    Wetmore, Stacey D.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2012, 116 (08): : 2622 - 2632
  • [33] Hydrogen bonding and π-π stacking in nicotinamide/H2O mixtures
    Zhai, Cuiping
    Zhang, Ping
    Peng, Peng
    Hou, Bingbing
    Li, Lina
    SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2017, 184 : 294 - 298
  • [34] Revisiting the Effects of Sequence and Structure on the Hydrogen Bonding and π-Stacking Interactions in Nucleic Acids
    Kamya, Petrina R. N.
    Muchall, Heidi M.
    JOURNAL OF PHYSICAL CHEMISTRY A, 2011, 115 (45): : 12800 - 12808
  • [35] Effects of hydrogen-bonding and stacking interactions with amino acids on the acidity of uracil
    Hunter, Ken C.
    Millen, Andrea L.
    Wetmore, Stacey D.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2007, 111 (07): : 1858 - 1871
  • [36] Hydrogen bonding and π-π stacking in two daidzein derivatives
    Zhang, Zun-Ting
    Cheng, Xin-Li
    JOURNAL OF COORDINATION CHEMISTRY, 2007, 60 (10) : 1111 - 1119
  • [37] Insights into Hydrogen Bonding and Stacking Interactions in Cellulose
    Parthasarathi, R.
    Bellesia, G.
    Chundawat, S. P. S.
    Dale, B. E.
    Langan, P.
    Gnanakaran, S.
    JOURNAL OF PHYSICAL CHEMISTRY A, 2011, 115 (49): : 14191 - 14202
  • [38] The effect of hydrogen bonding on the π depletion and the π-π stacking interaction
    Ahmed, Usman
    Sundholm, Dage
    Johansson, Mikael P.
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2024, 26 (43) : 27431 - 27438
  • [39] Stacking and hydrogen bonding: DNA cooperativity at melting
    Morozov, VF
    Badasyan, AV
    Grigoryan, AV
    Sahakyan, MA
    Mamasakhlisov, YS
    BIOPOLYMERS, 2004, 75 (05) : 434 - 439
  • [40] Theoretical calculation of circular dichroic exciton-split spectra in presence of three interacting 2-naphthoate chromophores
    Dong, JG
    Akritopoulou-Zanze, I
    Guo, JS
    Berova, N
    Nakanishi, K
    Harada, N
    ENANTIOMER, 1997, 2 (05): : 397 - 409