Liquid-Liquid Phase Separation of the Intrinsically Disordered Domain of the Fused in Sarcoma Protein Results in Substantial Slowing of Hydration Dynamics

被引:7
|
作者
Krevert, Carola S. [1 ]
Chavez, Daniel [2 ]
Chatterjee, Sayantan [1 ,3 ]
Stelzl, Lukas S. [4 ,5 ,6 ]
Puetz, Sabine [1 ]
Roeters, Steven J. [7 ,8 ]
Rudzinski, Joseph F. [2 ,9 ]
Fawzi, Nicolas L. [10 ]
Girard, Martin [2 ]
Parekh, Sapun H. [1 ,3 ]
Hunger, Johannes [1 ]
机构
[1] Max Planck Inst Polymer Res, Dept Mol Spect, D-55128 Mainz, Germany
[2] Max Planck Inst Polymer Res, Dept Polymer Theory, D-55128 Mainz, Germany
[3] Univ Texas Austin, Dept Biomed Engn, Austin, TX 78712 USA
[4] Johannes Gutenberg Univ Mainz, Inst Phys, KOMET1, D-55099 Mainz, Germany
[5] Johannes Gutenberg Univ Mainz, Fac Biol, D-55128 Mainz, Germany
[6] Inst Mol Biol IMB, D-55128 Mainz, Germany
[7] Aarhus Univ, Dept Chem, DK-8000 Aarhus, Denmark
[8] Vrije Univ, Dept Anat & Neurosci, Amsterdam UMC, NL-1081 HZ Amsterdam, Netherlands
[9] Humboldt Univ, Humboldt Universitat Berlin, D-12489 Berlin, Germany
[10] Brown Univ, Dept Mol Biol Cell Biol & Biochem, Providence, RI 02912 USA
来源
JOURNAL OF PHYSICAL CHEMISTRY LETTERS | 2023年 / 14卷 / 49期
基金
美国国家卫生研究院; 欧洲研究理事会; 美国国家科学基金会;
关键词
2-DIMENSIONAL INFRARED-SPECTROSCOPY; 2D IR SPECTROSCOPY; HYDROGEN-BOND; VIBRATIONAL SPECTROSCOPY; ALANINE DIPEPTIDE; FORCE-FIELD; SIMULATION; WATER; PEPTIDES; CONFORMATION;
D O I
10.1021/acs.jpclett.3c02790
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Formation of liquid condensates plays a critical role in biology via localization of different components or via altered hydrodynamic transport, yet the hydrogen-bonding environment within condensates, pivotal for solvation, has remained elusive. We explore the hydrogen-bond dynamics within condensates formed by the low-complexity domain of the fused in sarcoma protein. Probing the hydrogen-bond dynamics sensed by condensate proteins using two-dimensional infrared spectroscopy of the protein amide I vibrations, we find that frequency-frequency correlations of the amide I vibration decay on a picosecond time scale. Interestingly, these dynamics are markedly slower for proteins in the condensate than in a homogeneous protein solution, indicative of different hydration dynamics. All-atom molecular dynamics simulations confirm that lifetimes of hydrogen-bonds between water and the protein are longer in the condensates than in the protein in solution. Altered hydrogen-bonding dynamics may contribute to unique solvation and reaction dynamics in such condensates.
引用
收藏
页码:11224 / 11234
页数:11
相关论文
共 50 条
  • [21] Liquid-liquid phase separation of the intrinsically disordered AB region of hRXRγ is driven by hydrophobic interactions
    Soltys, Katarzyna
    Wycisk, Krzysztof
    Ozyhar, Andrzej
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2021, 183 : 936 - 949
  • [22] Biological soft matter: intrinsically disordered proteins in liquid-liquid phase separation and biomolecular condensates
    Fonin, Alexander V.
    Antifeeva, Iuliia A.
    Kuznetsova, Irina M.
    Turoverov, Konstantin K.
    Zaslavsky, Boris Y.
    Kulkarni, Prakash
    Uversky, Vladimir N.
    ESSAYS IN BIOCHEMISTRY, 2022, 66 (07) : 831 - 847
  • [23] The Role of Intrinsically Disordered Proteins in Liquid-Liquid Phase Separation during Calcium Carbonate Biomineralization
    Tarczewska, Aneta
    Bielak, Klaudia
    Zoglowek, Anna
    Soltys, Katarzyna
    Dobryszycki, Piotr
    Ozyhar, Andrzej
    Rozycka, Miroslawa
    BIOMOLECULES, 2022, 12 (09)
  • [24] Liquid-Liquid Phase Separation Is Driven by Large-Scale Conformational Unwinding and Fluctuations of Intrinsically Disordered Protein Molecules
    Majumdar, Anupa
    Dogra, Priyanka
    Maity, Shiny
    Mukhopadhyay, Samrat
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2019, 10 (14): : 3929 - 3936
  • [25] Models for liquid-liquid phase separation of disordered proteins
    Zheng, Wenwei
    Dignon, Gregory
    Brown, Matthew
    Best, Robert
    Kim, Youngchan
    Mittal, Jeetain
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2019, 257
  • [26] In-Silico Analysis of pH-Dependent Liquid-Liquid Phase Separation in Intrinsically Disordered Proteins
    Pintado-Grima, Carlos
    Barcenas, Oriol
    Ventura, Salvador
    BIOMOLECULES, 2022, 12 (07)
  • [27] Intermolecular Charge-Transfer Modulates Liquid-Liquid Phase Separation and Liquid-to-Solid Maturation of an Intrinsically Disordered pH-Responsive Domain
    Dogra, Priyanka
    Joshi, Ashish
    Majumdar, Anupa
    Mukhopadhyay, Samrat
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2019, 141 (51) : 20380 - 20389
  • [28] Track: Protein Phase Separation in Biomolecular Condensates Using Small Molecules to Dissect and Control the Energetics of Liquid-liquid Phase Separation in Intrinsically Disordered Peptide Systems
    Adderley, Davina
    Guo, Jennifer
    York, Jessica
    Metallo, Steven J.
    PROTEIN SCIENCE, 2023, 32
  • [29] The disordered protein SERF promotes α-Synuclein aggregation through liquid-liquid phase separation
    Liu, He-Ning
    Wang, Ting
    Hu, Jin-Jian
    Chen, Long
    Shi, Xiangyan
    Li, Yan-Mei
    Luo, Shi-Zhong
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2024, 300 (03)
  • [30] Liquid-liquid phase separation modulates membrane structure and hydration
    Mangiarotti, Agustin
    Zhao, Ziliang
    Chen, Nannan
    Malacrida, Leonel
    Dimova, Rumiana
    BIOPHYSICAL JOURNAL, 2022, 121 (03) : 172A - 172A