Genome-Wide Identification of GATA Family Genes in Phoebe bournei and Their Transcriptional Analysis under Abiotic Stresses

被引:8
|
作者
Yin, Ziyuan [1 ]
Liao, Wenhai [1 ,2 ]
Li, Jingshu [1 ,2 ]
Pan, Jinxi [1 ]
Yang, Sijia [1 ]
Chen, Shipin [1 ]
Cao, Shijiang [1 ,2 ]
机构
[1] Fujian Agr & Forestry Univ, Coll Forestry, Fuzhou 350002, Peoples R China
[2] Fujian Agr & Forestry Univ, Univ Key Lab Forest Stress Physiol Ecol & Mol Biol, Coll Forestry, Fuzhou 350002, Peoples R China
关键词
GATA family genes; Phoebe bournei; expression patterns; evolution; abiotic stress; MULTIPLE SEQUENCE ALIGNMENT; LOW-TEMPERATURE; DNA-BINDING; COLD-ACCLIMATION; FACTORS GNC; ARABIDOPSIS; TOLERANCE; EXPRESSION; EVOLUTION; PROTEINS;
D O I
10.3390/ijms241210342
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
GATA transcription factors are crucial proteins in regulating transcription and are characterized by a type-IV zinc finger DNA-binding domain. They play a significant role in the growth and development of plants. While the GATA family gene has been identified in several plant species, it has not yet been reported in Phoebe bournei. In this study, 22 GATA family genes were identified from the P. bournei genome, and their physicochemical properties, chromosomal distribution, subcellular localization, phylogenetic tree, conserved motif, gene structure, cis-regulatory elements in promoters, and expression in plant tissues were analyzed. Phylogenetic analysis showed that the PbGATAs were clearly divided into four subfamilies. They are unequally distributed across 11 out of 12 chromosomes, except chromosome 9. Promoter cis-elements are mostly involved in environmental stress and hormonal regulation. Further studies showed that PbGATA11 was localized to chloroplasts and expressed in five tissues, including the root bark, root xylem, stem bark, stem xylem, and leaf, which means that PbGATA11 may have a potential role in the regulation of chlorophyll synthesis. Finally, the expression profiles of four representative genes, PbGATA5, PbGATA12, PbGATA16, and PbGATA22, under drought, salinity, and temperature stress, were detected by qRT-PCR. The results showed that PbGATA5, PbGATA22, and PbGATA16 were significantly expressed under drought stress. PbGATA12 and PbGATA22 were significantly expressed after 8 h of low-temperature stress at 10 & DEG;C. This study concludes that the growth and development of the PbGATA family gene in P. bournei in coping with adversity stress are crucial. This study provides new ideas for studying the evolution of GATAs, provides useful information for future functional analysis of PbGATA genes, and helps better understand the abiotic stress response of P. bournei.
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页数:18
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