High-throughput segmentation, data visualization, and analysis of sea star skeletal networks

被引:0
|
作者
Tomholt, Lara [1 ,2 ]
Baum, Daniel [3 ]
Wood, Robert J. [1 ,4 ]
Weaver, James C. [1 ,4 ]
机构
[1] Harvard Univ, John A Paulson Sch Engn & Appl Sci, Cambridge, MA 02138 USA
[2] Harvard Univ, Grad Sch Design, 48 Quincy St, Cambridge, MA 02138 USA
[3] Zuse Inst Berlin, Dept Visual & Data Centr Comp, D-14195 Berlin, Germany
[4] Harvard Univ, Wyss Inst Biol Inspired Engn, Boston, MA 02115 USA
基金
美国国家科学基金会;
关键词
Pisaster giganteus; Asteroidea; Echinodermata; Biomineralization; Automated segmentation; Ossicle; Tomography; CONNECTIVE-TISSUE; PISASTER-OCHRACEUS; ECHINODERMATA; MORPHOLOGY; ASTEROIDEA; MECHANICS; ELEMENTS; CATCH; SHAPE;
D O I
10.1016/j.jsb.2023.107955
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The remarkably complex skeletal systems of the sea stars (Echinodermata, Asteroidea), consisting of hundreds to thousands of individual elements (ossicles), have intrigued investigators for more than 150 years. While the general features and structural diversity of isolated asteroid ossicles have been well documented in the literature, the task of mapping the spatial organization of these constituent skeletal elements in a whole-animal context represents an incredibly laborious process, and as such, has remained largely unexplored. To address this unmet need, particularly in the context of understanding structure-function relationships in these complex skeletal systems, we present an integrated approach that combines micro-computed tomography, automated ossicle segmentation, data visualization tools, and the production of additively manufactured tangible models to reveal biologically relevant structural data that can be rapidly analyzed in an intuitive manner. In the present study, we demonstrate this high-throughput workflow by segmenting and analyzing entire skeletal systems of the giant knobby star, Pisaster giganteus, at four different stages of growth. The in-depth analysis, presented herein, provides a fundamental understanding of the three-dimensional skeletal architec-ture of the sea star body wall, the process of skeletal maturation during growth, and the relationship between skeletal organization and morphological characteristics of individual ossicles. The widespread implementation of this approach for investigating other species, subspecies, and growth series has the potential to fundamentally improve our understanding of asteroid skeletal architecture and biodiversity in relation to mobility, feeding habits, and environmental specialization in this fascinating group of echinoderms.
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页数:18
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