Cuproptosis-related lncRNAs predict the prognosis and immune response in hepatocellular carcinoma

被引:11
|
作者
Zhang, Qiongyue [1 ]
Huang, Yan [1 ]
Xia, Yu [2 ]
Liu, Yumeng [1 ]
Gan, Jianhe [1 ]
机构
[1] Soochow Univ, Dept Infect Dis, Affiliated Hosp 1, Suzhou 215006, Jiangsu, Peoples R China
[2] Soochow Univ, Dept Orthopaed, Affiliated Hosp 1, Suzhou 215006, Peoples R China
关键词
Hepatocellular carcinoma; Cuproptosis; Long noncoding RNA; Immune infiltration; Prognosis; Tumor mutation burden; SERUM-LEVELS; TRACE-ELEMENTS; CANCER; RISK;
D O I
10.1007/s10238-022-00892-3
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Cuproptosis has been recently used to indicate unique biological processes triggered by Cu action as a new term. This study aimed to explore the relationship between cuproptosis-related lncRNA and hepatocellular carcinoma (HCC) with regard to immunity and prognosis. RNA sequencing and the clinical data were downloaded from the TCGA database. The cuproptosis-related genes were sorted out through literature study. The cuproptosis-related IncRNA signature was identified by Cox regression analysis and the least absolute shrinkage and selection operator analysis. The K-M survival analysis, receiver operating characteristic analysis, and C-index analysis were adopted to evaluate the prognostic prediction performance of the signature. The functional enrichment, immune infiltration and tumor mutation analysis were further analyzed. Subsequently, we predicted the differences in chemosensitivity from tumor gene expression levels for some chemotherapy drugs. The prognostic signature consisting of 5 overall survival-related CUPlncRNAs. It showed an extraordinary ability to predict the prognoses of patients with HCC. The signature can predict the abundance of immune cell infiltration, immune functions, expression of immune checkpoint inhibitors, m6A genes, which was supported by the GO biological process and KEGG analysis. And it may also have a guiding effect in the sensitivity of different chemotherapeutic drugs and tumor mutation burden. We constructed a new cuproptosis-related lncRNA signature for HCC patients. The model can be used for prognostic prediction and immune evaluation, providing a reference for immunotherapies and targeted therapies.
引用
收藏
页码:2051 / 2064
页数:14
相关论文
共 50 条
  • [41] Comprehensive analysis of cuproptosis-related lncRNAs in the prognosis and therapy response of patients with bladder cancer
    Li, Ding
    Wu, Xuan
    Fan, Xinxin
    Cheng, Cheng
    Li, Dongbei
    Zhang, Wenzhou
    ANNALS OF TRANSLATIONAL MEDICINE, 2022,
  • [42] Cuproptosis-related lncRNA signatures predict prognosis and immune relevance of kidney renal papillary cell carcinoma
    Xie, Tongjin
    Liu, Bin
    Liu, Dongbo
    Zhou, Yusong
    Yang, Qingping
    Wang, Dai
    Tang, Mengjie
    Liu, Wei
    FRONTIERS IN PHARMACOLOGY, 2022, 13
  • [43] Prognostic value and immune landscapes of cuproptosis-related lncRNAs in esophageal squamous cell carcinoma
    Zhang, Xiang
    Feng, Nan
    Wu, Bo
    Guo, Zishun
    Pan, Tiewen
    Tao, Xiandong
    Zheng, Hongyang
    Zhang, Wenxiong
    AGING-US, 2023, 15 (19): : 10473 - 10500
  • [44] A cuproptosis-related lncRNA signature to predict prognosis and immune microenvironment of colon adenocarcinoma
    Li, Dongming
    Qu, Guangzhen
    Ling, Shen
    Sun, Yuanlin
    Cui, Yingnan
    Yang, Yingchi
    Cao, Xueyuan
    SCIENTIFIC REPORTS, 2023, 13 (01)
  • [45] A novel cuproptosis-related lncRNAs signature predicts prognostic and immune of bladder urothelial carcinoma
    Zhou, Zheng
    Zhou, Yusong
    Liu, Wei
    Dai, Jing
    FRONTIERS IN GENETICS, 2023, 14
  • [46] A cuproptosis-related lncRNA signature to predict prognosis and immune microenvironment of colon adenocarcinoma
    Dongming Li
    Guangzhen Qu
    Shen Ling
    Yuanlin Sun
    Yingnan Cui
    Yingchi Yang
    Xueyuan Cao
    Scientific Reports, 13
  • [47] Cuproptosis- and m6A-Related lncRNAs for Prognosis of Hepatocellular Carcinoma
    Zhu, Yuezhi
    Tan, Jen Kit
    Goon, Jo Aan
    BIOLOGY-BASEL, 2023, 12 (08):
  • [48] A novel cuproptosis-related lncRNA signature predicts the prognosis and immunotherapy for hepatocellular carcinoma
    Liu, Yanqing
    Jiang, Jianshuai
    CANCER BIOMARKERS, 2023, 37 (01) : 13 - 26
  • [49] An integrative analysis revealing cuproptosis-related lncRNAs signature as a novel prognostic biomarker in hepatocellular carcinoma
    Chen, Xilang
    Sun, Mengyu
    Feng, Weibo
    Chen, Jie
    Ji, Xiaoyu
    Xie, Meng
    Huang, Wenjie
    Chen, Xiaoping
    Zhang, Bixiang
    Nie, Yongzhan
    Fan, Daiming
    Wu, Kaichun
    Xia, Limin
    FRONTIERS IN GENETICS, 2023, 14
  • [50] Cuproptosis-related lncRNAs and genes: Potential markers for glioblastoma prognosis and treatment
    Chen, Yajia
    Zhang, Jingxian
    Zheng, Weiqian
    Xu, Hongwu
    PLOS ONE, 2025, 20 (02):