computational protein design;
protein switches;
protein-ligand interactions;
protein-protein interactions;
small molecule;
synthetic biology;
INDUCED DIMERIZATION;
BINDING DOMAIN;
ACTIVATION;
RAPAMYCIN;
HAPTEN;
D O I:
10.1002/pro.4774
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
Small-molecule responsive protein switches are powerful tools for controlling cellular processes. These switches are designed to respond rapidly and specifically to their inducer. They have been used in numerous applications, including the regulation of gene expression, post-translational protein modification, and signal transduction. Typically, small-molecule responsive protein switches consist of two proteins that interact with each other in the presence or absence of a small molecule. Recent advances in computational protein design already contributed to the development of protein switches with an expanded range of small-molecule inducers and increasingly sophisticated switch mechanisms. Further progress in the engineering of small-molecule responsive switches is fueled by cutting-edge computational design approaches, which will enable more complex and precise control over cellular processes and advance synthetic biology applications in biotechnology and medicine. Here, we discuss recent milestones and how technological advances are impacting the development of chemical switches.
机构:
Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CTDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Bondeson D.P.
Mares A.
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机构:
GSK Medicines Research Centre, StevenageDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Mares A.
Smith I.E.D.
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机构:
GSK Medicines Research Centre, StevenageDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Smith I.E.D.
Ko E.
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机构:
Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CTDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Ko E.
Campos S.
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机构:
GSK Medicines Research Centre, StevenageDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Campos S.
Miah A.H.
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机构:
GSK Medicines Research Centre, StevenageDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Miah A.H.
Mulholland K.E.
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机构:
GSK Medicines Research Centre, StevenageDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Mulholland K.E.
Routly N.
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机构:
GSK Medicines Research Centre, StevenageDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Routly N.
Buckley D.L.
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机构:
Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CTDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Buckley D.L.
Gustafson J.L.
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机构:
Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CTDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Gustafson J.L.
Zinn N.
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机构:
Cellzome, a GSK Company, HeidelbergDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Zinn N.
Grandi P.
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机构:
Cellzome, a GSK Company, HeidelbergDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Grandi P.
Shimamura S.
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机构:
Cellzome, a GSK Company, HeidelbergDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Shimamura S.
Bergamini G.
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机构:
Cellzome, a GSK Company, HeidelbergDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Bergamini G.
Faelth-Savitski M.
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Cellzome, a GSK Company, HeidelbergDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Faelth-Savitski M.
Bantscheff M.
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Cellzome, a GSK Company, HeidelbergDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Bantscheff M.
Cox C.
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机构:
Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CTDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Cox C.
Gordon D.A.
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机构:
Arvinas, Inc., New Haven, CTDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Gordon D.A.
Willard R.R.
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机构:
Arvinas, Inc., New Haven, CTDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Willard R.R.
Flanagan J.J.
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机构:
Arvinas, Inc., New Haven, CTDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Flanagan J.J.
Casillas L.N.
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机构:
Pattern Recognition Receptor Discovery Performance Unit, GlaxoSmithKline, Collegeville, PADepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Casillas L.N.
Votta B.J.
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机构:
Pattern Recognition Receptor Discovery Performance Unit, GlaxoSmithKline, Collegeville, PADepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Votta B.J.
Den Besten W.
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机构:
Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CADepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Den Besten W.
Famm K.
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机构:
GSK Medicines Research Centre, StevenageDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Famm K.
Kruidenier L.
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机构:
GSK Medicines Research Centre, StevenageDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Kruidenier L.
Carter P.S.
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机构:
GSK Medicines Research Centre, StevenageDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Carter P.S.
Harling J.D.
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机构:
GSK Medicines Research Centre, StevenageDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Harling J.D.
Churcher I.
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机构:
GSK Medicines Research Centre, StevenageDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Churcher I.
Crews C.M.
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机构:
Department of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
Department of Chemistry, Yale University, New Haven, CT
Department of Pharmacology, Yale University, New Haven, CTDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT
机构:
Chinese Acad Sci, State Key Lab Drug Res, Shanghai Inst Mat Med, Shanghai 201203, Peoples R ChinaChinese Acad Sci, State Key Lab Drug Res, Shanghai Inst Mat Med, Shanghai 201203, Peoples R China
Wang, Yong
Long, Yaqiu
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机构:
Chinese Acad Sci, State Key Lab Drug Res, Shanghai Inst Mat Med, Shanghai 201203, Peoples R ChinaChinese Acad Sci, State Key Lab Drug Res, Shanghai Inst Mat Med, Shanghai 201203, Peoples R China
机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Lau, Jolene L.
Baksh, Michael M.
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机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Baksh, Michael M.
Fiedler, Jason D.
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机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Fiedler, Jason D.
Brown, Steven D.
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机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Brown, Steven D.
Kussrow, Amanda
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机构:
Vanderbilt Univ, Vanderbilt Inst Chem Biol, Dept Chem, Nashville, TN 37235 USAScripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Kussrow, Amanda
Bornhop, Darryl J.
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机构:
Vanderbilt Univ, Vanderbilt Inst Chem Biol, Dept Chem, Nashville, TN 37235 USAScripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Bornhop, Darryl J.
Ordoukhanian, Phillip
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机构:
Scripps Res Inst, Ctr Prot & Nucle Acid Res, La Jolla, CA 92037 USAScripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Ordoukhanian, Phillip
Finn, M. G.
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机构:
Scripps Res Inst, Dept Chem, La Jolla, CA 92037 USA
Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USAScripps Res Inst, Dept Chem, La Jolla, CA 92037 USA