The pan-cancer landscape of glutamate and glutamine metabolism: A comprehensive bioinformatic analysis across 32 solid cancer types

被引:5
|
作者
Xue, Wenhua [1 ,2 ]
Wu, Kai [3 ]
Guo, Xiaona [2 ]
Chen, Chengxin [1 ,4 ]
Huang, Tao [2 ]
Li, Lifeng [4 ,5 ]
Liu, Bin [6 ]
Chang, Hao [7 ]
Zhao, Jie [1 ,4 ,8 ]
机构
[1] Zhengzhou Univ, Dept Pharm, Affiliated Hosp 1, Zhengzhou 450052, Peoples R China
[2] Huanghe Sci & Technol Univ, Med Sch, Zhengzhou 450052, Peoples R China
[3] Zhengzhou Univ, Dept Thorac Surg, Affiliated Hosp 1, Zhengzhou 450052, Peoples R China
[4] Zhengzhou Univ, Internet Med & Syst Applicat Natl Engn Lab, Affiliated Hosp 1, Zhengzhou 450052, Peoples R China
[5] Zhengzhou Univ, Affiliated Hosp 1, Canc Ctr, Zhengzhou 450052, Peoples R China
[6] Jiangsu Ocean Univ, Coll Pharm, Jiangsu Key Lab Marine Pharmaceut Cpd Screening, Lianyungang, Peoples R China
[7] Hanyu Biomed Ctr Beijing, Dept Canc Res, Beijing 102488, Peoples R China
[8] Zhengzhou Univ, Natl Engn Lab Internet Med Syst & Applicat, Affiliated Hosp 1, 1 East Jianshe Rd, Zhengzhou 450052, Peoples R China
来源
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE | 2024年 / 1870卷 / 02期
关键词
Glutamate and glutamine metabolism; Genetic alternations; Tumor microenvironment; Drug sensitivity; Prognosis; Molecular subtypes; ENRICHMENT; EXPRESSION; DISCOVERY;
D O I
10.1016/j.bbadis.2023.166982
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Glutamine metabolism is a hallmark of cancer metabolism, which matters in the progression of the tumor. This synthetic study conducted a large-scale systematic analysis at the pan-cancer level on the glutamate and glutamine metabolism (GGM) across 32 solid tumors from the TCGA database. The glutamine metabolism activity was quantified through a scoring system. This study revealed that the GGM score in tumor tissues was up-regulated in 13 cancer types (BCLA, BRCA, COAD, KICH, KIRP, LUAD, LUSC, PAAD, PRAD, READ, STAD, THYM, UCEC) and down-regulated in 4 cancer types (CHOL, GBM, LIHC, THCA), exhibiting tissue specificity. The mRNA expression levels of glutamine metabolism-related genes were relatively high, and GLUL exhibited the highest expression level. The expression levels were up-regulated with copy number amplification. ALDH18A1, PYCR1, and PYCR2 show a significant upregulation in protein levels in cancer tissues compared to normal tissues, making them potential pan-cancer therapeutic targets. For the TME related to glutamine metabolism, the GGM score exhibited significant immune and stromal environment inhibitory effects in all involved tumors. Up-regulated GGM score indicated the widespread promotion of drug resistance at the pan-cancer level. GGM score and glutamine metabolism-related genes signature tended to be risk factors for the overall survival of cancer patients.
引用
收藏
页数:16
相关论文
共 50 条
  • [31] Comprehensive pan-cancer analysis: essential role of ABCB family genes in cancer
    Xiao, Hui-Ni
    Zhao, Zi-Yue
    Li, Jin-Ping
    Li, Ao-Yu
    TRANSLATIONAL CANCER RESEARCH, 2024, 13 (04) : 1642 - 1664
  • [32] Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors
    Lee, Jessica K.
    Sivakumar, Smruthy
    Schrock, Alexa B.
    Madison, Russell
    Fabrizio, David
    Gjoerup, Ole
    Ross, Jeffrey S.
    Frampton, Garrett M.
    Napalkov, Pavel
    Montesion, Meagan
    Schutzman, Jennifer L.
    Ye, Xin
    Hegde, Priti S.
    Nagasaka, Misako
    Oxnard, Geoffrey R.
    Sokol, Ethan S.
    Ou, Sai-Hong Ignatius
    Shi, Zhen
    NPJ PRECISION ONCOLOGY, 2022, 6 (01)
  • [33] A Comprehensive Exploration of the lncRNA CCAT2: A Pan-Cancer Analysis Based on 33 Cancer Types and 13285 Cases
    Huang, Bowen
    Yu, Min
    Guan, Renguo
    Liu, Dong
    Hou, Baohua
    DISEASE MARKERS, 2020, 2020
  • [34] A comprehensive analysis of PANoptosome to prognosis and immunotherapy response in pan-cancer
    Zhuang, Lingling
    Sun, Qiran
    Huang, Shenglan
    Hu, Lanyan
    Chen, Qi
    SCIENTIFIC REPORTS, 2023, 13 (01)
  • [35] Comprehensive pan-cancer analysis of LAMAS: implications for prognosis and immunotherapy
    Huang, Hui
    Dong, Wei
    Qin, Xuan
    Usama, Ali
    Cheema, Anees
    Deng, Chunlei
    Sarfaraz, Sara
    Pan, Qingyun
    Alhomrani, Majid
    Alamri, Abdulhakeem S.
    Alsuhaymi, Naif
    Alghamdi, Saleh A.
    Alghamdi, Ahmad A.
    Zheng, Su
    AMERICAN JOURNAL OF TRANSLATIONAL RESEARCH, 2025, 17 (02):
  • [36] Comprehensive pan-cancer genomic landscape of KRAS altered cancers and real-world outcomes in solid tumors
    Jessica K. Lee
    Smruthy Sivakumar
    Alexa B. Schrock
    Russell Madison
    David Fabrizio
    Ole Gjoerup
    Jeffrey S. Ross
    Garrett M. Frampton
    Pavel Napalkov
    Meagan Montesion
    Jennifer L. Schutzman
    Xin Ye
    Priti S. Hegde
    Misako Nagasaka
    Geoffrey R. Oxnard
    Ethan S. Sokol
    Sai-Hong Ignatius Ou
    Zhen Shi
    npj Precision Oncology, 6
  • [37] Comprehensive analysis of the expression and prognosis for APOE in malignancies: A pan-cancer analysis
    Yu, Shoukai
    Qian, Lingmei
    Ma, Jun
    ONCOLOGY RESEARCH, 2022, 30 (01) : 13 - 22
  • [38] A comprehensive analysis of PANoptosome to prognosis and immunotherapy response in pan-cancer
    Lingling Zhuang
    Qiran Sun
    Shenglan Huang
    Lanyan Hu
    Qi Chen
    Scientific Reports, 13
  • [39] Comprehensive Characterization of the Integrin Family Across 32 Cancer Types
    Zou, Cheng
    Zhu, Jinwei
    Xiong, Jiangling
    Tian, Yu
    Peng, Yousong
    Cheung, Edwin
    Zhang, Dingxiao
    GENOMICS PROTEOMICS & BIOINFORMATICS, 2024, 22 (04)
  • [40] The comprehensive landscape of prognosis, immunity, and function of the GLI family by pan-cancer and single-cell analysis
    Wu, Yinteng
    Guo, Wenliang
    Wang, Tao
    Liu, Ying
    Mullor, Maria del Mar Requena
    Rodriguez, Raquel Alarcon
    Zhao, Shijian
    Wei, Ruqiong
    AGING-US, 2024, 16 (06): : 5123 - 5148