Quantitative and qualitative mutational impact of ionizing radiation on normal cells

被引:4
|
作者
Youk, Jeonghwan [1 ]
Kwon, Hyun Woo [2 ,3 ]
Lim, Joonoh [1 ,4 ]
Kim, Eunji [5 ,6 ]
Kim, Taewoo [1 ]
Kim, Ryul [1 ,4 ]
Park, Seongyeol [1 ,4 ]
Yi, Kijong [1 ,4 ]
Nam, Chang Hyun [1 ]
Jeon, Sara [7 ,8 ]
An, Yohan [1 ]
Choi, Jinwook [9 ,10 ]
Na, Hyelin [11 ,21 ]
Lee, Eon-Seok [12 ]
Cho, Youngwon [2 ,13 ]
Min, Dong-Wook [2 ,13 ]
Kim, Hyojin [12 ]
Kang, Yeong-Rok [12 ]
Choi, Si Ho [12 ]
Bae, Min Ji [12 ]
Lee, Chang Geun [12 ]
Kim, Joon-Goon [1 ,19 ]
Kim, Young Seo [1 ,19 ]
Yu, Tosol [6 ,15 ]
Lee, Won-Chul [4 ]
Shin, Jong-Yeon [4 ]
Lee, Dong Soo [2 ,16 ]
Kim, Tae-You [2 ,13 ]
Ku, Taeyun [1 ,14 ,17 ]
Kim, Su Yeon [1 ]
Lee, Joo-Hyeon [9 ,10 ]
Koo, Bon-Kyoung [11 ]
Lee, Hyunsook [7 ,8 ]
Yi, On Vox [18 ]
Han, Eon Chul [19 ]
Chang, Ji Hyun [6 ,20 ]
Kim, Kyung Su [6 ,20 ]
Son, Tae Gen [12 ]
Seok, Young [1 ,4 ]
机构
[1] Korea Adv Inst Sci & Technol KAIST, Grad Sch Med Sci & Engn, Daejeon 34141, South Korea
[2] Seoul Natl Univ, Grad Sch Convergence Sci & Technol, Dept Mol Med & Biopharmaceut Sci, Seoul 08826, South Korea
[3] Korea Univ, Coll Med, Dept Nucl Med, Seoul, South Korea
[4] Genome Insight Inc, San Diego, CA 92121 USA
[5] Seoul Natl Univ, Boramae Med Ctr, Dept Radiat Oncol, Seoul Metropolitan Govt, 20 Boramae Ro,5 Gil, Seoul 07061, South Korea
[6] Seoul Natl Univ, Coll Med, Dept Radiat Oncol, Seoul 03080, South Korea
[7] Seoul Natl Univ, Dept Biol Sci, 1 Gwanak Ro, Seoul 08826, South Korea
[8] Seoul Natl Univ, IMBG, 1 Gwanak Ro, Seoul 08826, South Korea
[9] Univ Cambridge, Jeffrey Cheah Biomed Ctr, Wellcome MRC Cambridge Stem Cell Inst, Cambridge CB2 0AW, England
[10] Univ Cambridge, Dept Physiol Dev & Neurosci, Cambridge CB2 3EL, England
[11] Austrian Acad Sci IMBA, Inst Mol Biotechnol, Vienna Bioctr VBC, Dr Bohr Gasse 3, A-1030 Vienna, Austria
[12] Dongnam Inst Radiol & Med Sci, Res Ctr, Busan, South Korea
[13] Seoul Natl Univ, Canc Res Inst, Seoul, South Korea
[14] Korea Adv Inst Sci & Technol, KI Hlth Sci & Technol, Daejeon 34141, South Korea
[15] Dongnam Inst Radiol & Med Sci, Dept Radiat Oncol, Busan 46033, South Korea
[16] Seoul Natl Univ, Coll Med, Dept Nucl Med, Seoul 03080, South Korea
[17] Seoul Natl Univ Hosp, Dept Internal Med, Seoul 03080, South Korea
[18] Dongnam Inst Radiol & Med Sci, Dept Breast Surg, Busan, South Korea
[19] Dongnam Inst Radiol & Med Sci, Dept Surg, Busan, South Korea
[20] Seoul Natl Univ Hosp, Dept Radiat Oncol, Seoul, South Korea
[21] Tony Investment Co Ltd, Seoul 06180, South Korea
来源
CELL GENOMICS | 2024年 / 4卷 / 02期
基金
新加坡国家研究基金会;
关键词
ADULT STEM-CELLS; SOMATIC MUTATIONS; READ ALIGNMENT; COPY NUMBER; DNA-DAMAGE; R PACKAGE; IN-VITRO; CANCER; SIGNATURES; ORGANOIDS;
D O I
10.1016/j.xgen.2024.100499
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
The comprehensive genomic impact of ionizing radiation (IR), a carcinogen, on healthy somatic cells remains unclear. Using large-scale whole-genome sequencing (WGS) of clones expanded from irradiated murine and human single cells, we revealed that IR induces a characteristic spectrum of short insertions or deletions (indels) and structural variations (SVs), including balanced inversions, translocations, composite SVs (deletion -insertion, deletion -inversion, and deletion-translocation composites), and complex genomic rearrangements (CGRs), including chromoplexy, chromothripsis, and SV by breakage -fusion -bridge cycles. Our findings suggest that 1 Gy IR exposure causes an average of 2.33 mutational events per Gb genome, comprising 2.15 indels, 0.17 SVs, and 0.01 CGRs, despite a high level of inter -cellular stochasticity. The mutational burden was dependent on total irradiation dose, regardless of dose rate or cell type. The findings were further validated in IR-induced secondary cancers and single cells without clonalization. Overall, our study highlights a comprehensive and clear picture of IR effects on normal mammalian genomes.
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页数:30
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