Opacimonas viscosa gen. nov., sp. nov., a novel bacterium isolated from phycosphere

被引:0
|
作者
Lin, Xuanru [1 ,2 ]
Cai, Runlin [1 ,2 ,3 ]
Cai, Guanjing [1 ,2 ,3 ]
Xie, Jianmin [1 ,2 ]
Zhou, Zhenyuan [1 ,2 ]
Wang, Hui [1 ,2 ,3 ]
机构
[1] Shantou Univ, Coll Sci, Biol Dept, Shantou 515063, Peoples R China
[2] Shantou Univ, Inst Marine Sci, Coll Sci, Shantou 515063, Peoples R China
[3] Shantou Univ, Guangdong Prov Key Lab Marine Biotechnol, Shantou 515063, Peoples R China
基金
中国国家自然科学基金;
关键词
Opacimonas; phycosphere; polyphasic analysis; genome reduction; DYELLA; DNA; ALGORITHM; SEQUENCES; DATABASE; SURFACE;
D O I
10.1099/ijsem.0.005904
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
A novel strain of a member of the family Alteromonadaceae was isolated from the phycosphere of a diatom and designated as LMIT007T. LMIT007T could form milk- white, opaque, circular and smooth colonies on 2216E marine agar. LMIT007T cells were around 1.0-1.8 mu m long, 0.8-1.8 mu m wide, round or oval shaped and had polar flagella but were non- motile. Optimum conditions for growth were 25 degrees C, pH 7.0 and 6 % (w/v) NaCl. The results of 16S rRNA gene- based analysis indicated that LMIT007T had the highest similarity with the type strains Aestuaribacter halophilus JC2043T (95.95 %), Alteromonas lipolytica JW12T (95.60 %) and Alteromonas halophila KCTC 22164T (94.21 %). Furthermore, the results of phylogenetic analysis based on 16S rRNA gene sequences and of phylogenomic analysis indicated that LMIT007T could be clustered into the family Alteromonadaceae but formed a separate branch. The genome size of the strain was 2.95 Mbp and the DNA G+C content was 41.6 %. The average nucleotide identity (ANI) values of orthologous genes between LMIT007T and species of other closely related genera within the family Alteromonadaceae ranged from 66.9 to 69.2 %, and the average amino acid identity (AAI) values ranged from 60.0 to 65.7 %. The main respiratory quinone was ubiquinone- 8. The major fatty acids were summed feature 3 (C16:1 omega 7c / C16:1 omega 6c) and C16:0. The polar lipid profile contain phosphatidylethanolamine, phosphatidylglycerol, aminolipid, two phospholipid and an unknown polar lipid. On the basis of the results of the polyphasic analysis, strain LMIT007T is suggested to represent a novel genus and species within the family Alteromonadaceae, for which the name Opacimonas viscosa gen. nov., sp. nov. is proposed. The type strain is LMIT007T (=MCCC 1K08161T=KCTC 92597T).
引用
收藏
页数:9
相关论文
共 50 条
  • [41] Algicella marina gen. nov., sp. nov., a novel marine bacterium isolated from a Pacific red alga
    Olga I. Nedashkovskaya
    Nadezhda Y. Otstavnykh
    Song-Gun Kim
    Andrey D. Kukhlevskiy
    Natalia V. Zhukova
    Marina P. Isaeva
    Archives of Microbiology, 2022, 204
  • [42] Pseudopontivivens aestuariicola gen. nov., sp. nov., a Novel Bacterium of the Class Alphaproteobacteria Isolated from a Tidal Flat
    Sooyeon Park
    Jeehyun Choi
    Ji-Min Park
    Jung-Hoon Yoon
    Current Microbiology, 2018, 75 : 1516 - 1522
  • [43] Corallibacterium pacifica gen. nov., sp. nov., a Novel Bacterium of the Family Vibrionaceae Isolated from Hard Coral
    Sachithra Amarin Hettiarachchi
    Su-Jin Lee
    Youngdeuk Lee
    Young-Kyung Kwon
    Kae Kyoung Kwon
    Sung-Hyun Yang
    Eunyoung Jo
    Do-Hyung Kang
    Chulhong Oh
    Current Microbiology, 2018, 75 : 835 - 841
  • [44] Sulfoacidibacillus ferrooxidans, gen. nov., sp. nov., Sulfoacidibacillus thermotolerans, gen. nov., sp. nov., and Ferroacidibacillus organovorans, gen. nov., sp. nov.: Extremely acidophilic chemolitho-heterotrophic
    Johnson, D. Barrie
    Holmes, David S.
    Vergara, Eva
    Holanda, Roseanne
    Pakostova, Eva
    RESEARCH IN MICROBIOLOGY, 2023, 174 (03)
  • [45] Avrilella dinanensis gen. nov., sp. nov., a novel bacterium of the family Flavobacteriaceae isolated from human blood
    Leyer, Caroline
    Sassi, Mohamed
    Gourmelen, Frederic
    Burel, Agnes
    Beyrouthy, Racha
    Kayal, Samer
    Bonnet, Richard
    Cattoir, Vincent
    SYSTEMATIC AND APPLIED MICROBIOLOGY, 2020, 43 (05)
  • [46] Algicella marina gen. nov., sp. nov., a novel marine bacterium isolated from a Pacific red alga
    Nedashkovskaya, Olga I.
    Otstavnykh, Nadezhda Y.
    Kim, Song-Gun
    Kukhlevskiy, Andrey D.
    Zhukova, Natalia V.
    Isaeva, Marina P.
    ARCHIVES OF MICROBIOLOGY, 2022, 204 (08)
  • [47] Mesobaculum littorinae gen. nov., sp. nov., a novel bacterium isolated from a sea snail Littorina scabra
    Li, Fei
    Huang, Yuanlin
    Hu, Wenjin
    Li, Zhe
    Wang, Qiaozhen
    Huang, Shushi
    Yu, Lian
    Liu, Shaowei
    Sun, Chenghang
    Pan, Xinli
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71 (06)
  • [48] Penaeicola halotolerans gen. nov., sp. nov., a novel bacterium of the family Cyclobacteriaceae isolated from a shrimp pond
    Ali, Sardar
    Xie, Jianmin
    Chen, Yuerong
    Cai, Runlin
    Juventus, Aweya Jude
    Hu, Zhong
    Zhang, Yueling
    Wang, Hui
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2021, 71 (10)
  • [49] Aquipluma nitroreducens gen. nov. sp. nov., a novel facultatively anaerobic bacterium isolated from a freshwater lake
    Watanabe, Miho
    Kojima, Hisaya
    Fukui, Manabu
    INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2020, 70 (12) : 6408 - 6413
  • [50] Pigmentibacter ruber gen. nov., sp. nov., a novel bacterium of the family Silvanigrellaceae isolated from human blood
    Na Peng
    Wen Xu
    Hai-Min Luo
    Peng-Wen Ouyang
    Bin Jiang
    Zhi-Hua Zhang
    You-De Cao
    Li-Ming Tan
    Ping-Hua Qu
    Liang-Yi Xie
    Antonie van Leeuwenhoek, 2021, 114 : 731 - 739