Online biomedical named entities recognition by data and knowledge-driven model

被引:3
|
作者
Cao, Lulu [1 ]
Wu, Chaochen [3 ]
Luo, Guan [2 ]
Guo, Chao [4 ]
Zheng, Anni [2 ]
机构
[1] Peking Univ, Peoples Hosp, Dept Rheumatol & Immunol, Beijing 100044, Peoples R China
[2] Chinese Acad Sci, State Key Lab Multimodal Artificial Intelligence S, Inst Automat, Beijing, Peoples R China
[3] Renmin Univ China, Beijing 100872, Peoples R China
[4] CAMS & PUMC, Fuwai Hosp, Dept Cardiol, Beijing 100037, Peoples R China
基金
中国国家自然科学基金;
关键词
Biomedical named entity recognition; Neural network; Pre-training; Knowledge representation; Online text;
D O I
10.1016/j.artmed.2024.102813
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Named entity recognition (NER) is an important task for the natural language processing of biomedical text. Currently, most NER studies standardized biomedical text, but NER for unstandardized biomedical text draws less attention from researchers. Named entities in online biomedical text exist with errors and polymorphisms, which negatively impact NER models' performance and impede support from knowledge representation methods. In this paper, we propose a neural network method that can effectively recognize entities in unstandardized online medical/health text. We introduce a new pre -training scheme that uses largescale online question -answering pairs to enhance transformers' model capacity on online biomedical text. Moreover, we supply models with knowledge representations from a knowledge base called multi -channel knowledge labels, and this method overcomes the restriction from languages, like Chinese, that require word segmentation tools to represent knowledge. Our model outperforms other baseline methods significantly in experiments on a dataset for Chinese online medical entity recognition and achieves state-of-the-art results.
引用
收藏
页数:7
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