Exploring the Advantages of Quantum Generative Adversarial Networks in Generative Chemistry

被引:19
|
作者
Kao, Po-Yu [1 ]
Yang, Ya-Chu [1 ]
Chiang, Wei-Yin [2 ]
Hsiao, Jen-Yueh [2 ]
Cao, Yudong [3 ]
Aliper, Alex [4 ]
Ren, Feng [5 ]
Aspuru-Guzik, Alan [6 ,7 ,8 ,9 ]
Zhavoronkov, Alex [10 ]
Hsieh, Min-Hsiu [2 ]
Lin, Yen-Chu [1 ,11 ]
机构
[1] Insil Med Taiwan Ltd, Taipei 110208, Taiwan
[2] Hon Hai Foxconn Res Inst, Taipei 114699, Taiwan
[3] Zapata Comp Inc, Boston, MA 02110 USA
[4] Insil Med AI Ltd, Abu Dhabi 145748, U Arab Emirates
[5] Insil Med Shanghai Ltd, Shanghai 201203, Peoples R China
[6] Univ Toronto, Dept Chem, Toronto, ON M5S 3H6, Canada
[7] Univ Toronto, Dept Comp Sci, Toronto, ON M5S 2E4, Canada
[8] Vector Inst Artificial Intelligence, Toronto, ON M5S 1M1, Canada
[9] Canadian Inst Adv Res, Toronto, ON M5S 1M1, Canada
[10] Insil Med Hong Kong Ltd, Hong Kong 999077, Peoples R China
[11] Natl Yang Ming Chiao Tung Univ, Dept Pharm, Taipei 112304, Taiwan
关键词
SMALL MOLECULES;
D O I
10.1021/acs.jcim.3c00562
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
De novo drug design with desired biological activitiesis crucialfor developing novel therapeutics for patients. The drug developmentprocess is time- and resource-consuming, and it has a low probabilityof success. Recent advances in machine learning and deep learningtechnology have reduced the time and cost of the discovery processand therefore, improved pharmaceutical research and development. Inthis paper, we explore the combination of two rapidly developing fieldswith lead candidate discovery in the drug development process. First,artificial intelligence has already been demonstrated to successfullyaccelerate conventional drug design approaches. Second, quantum computinghas demonstrated promising potential in different applications, suchas quantum chemistry, combinatorial optimizations, and machine learning.This article explores hybrid quantum-classical generative adversarialnetworks (GAN) for small molecule discovery. We substituted each elementof GAN with a variational quantum circuit (VQC) and demonstrated thequantum advantages in the small drug discovery. Utilizing a VQC inthe noise generator of a GAN to generate small molecules achievesbetter physicochemical properties and performance in the goal-directedbenchmark than the classical counterpart. Moreover, we demonstratethe potential of a VQC with only tens of learnable parameters in thegenerator of GAN to generate small molecules. We also demonstratethe quantum advantage of a VQC in the discriminator of GAN. In thishybrid model, the number of learnable parameters is significantlyless than the classical ones, and it can still generate valid molecules.The hybrid model with only tens of training parameters in the quantumdiscriminator outperforms the MLP-based one in terms of both generatedmolecule properties and the achieved KL divergence. However, the hybridquantum-classical GANs still face challenges in generating uniqueand valid molecules compared to their classical counterparts.
引用
收藏
页码:3307 / 3318
页数:12
相关论文
共 50 条
  • [21] Interpretable Generative Adversarial Networks
    Li, Chao
    Yao, Kelu
    Wang, Jin
    Diao, Boyu
    Xu, Yongjun
    Zhang, Quanshi
    THIRTY-SIXTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE / THIRTY-FOURTH CONFERENCE ON INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE / THE TWELVETH SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE, 2022, : 1280 - 1288
  • [22] Steganographic Generative Adversarial Networks
    Volkhonskiy, Denis
    Nazarov, Ivan
    Burnaev, Evgeny
    TWELFTH INTERNATIONAL CONFERENCE ON MACHINE VISION (ICMV 2019), 2020, 11433
  • [23] Wasserstein Generative Adversarial Networks
    Arjovsky, Martin
    Chintala, Soumith
    Bottou, Leon
    INTERNATIONAL CONFERENCE ON MACHINE LEARNING, VOL 70, 2017, 70
  • [24] Coevolution of Generative Adversarial Networks
    Costa, Victor
    Lourenco, Nuno
    Machado, Penousal
    APPLICATIONS OF EVOLUTIONARY COMPUTATION, EVOAPPLICATIONS 2019, 2019, 11454 : 473 - 487
  • [25] A survey of generative adversarial networks
    Zhu, Kongtao
    Liu, Xiwei
    Yang, Hongxue
    2018 CHINESE AUTOMATION CONGRESS (CAC), 2018, : 2768 - 2773
  • [26] Triple Generative Adversarial Networks
    Li, Chongxuan
    Xu, Kun
    Zhu, Jun
    Liu, Jiashuo
    Zhang, Bo
    IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE, 2022, 44 (12) : 9629 - 9640
  • [27] Stacked Generative Adversarial Networks
    Huang, Xun
    Li, Yixuan
    Poursaeed, Omid
    Hopcroft, John
    Belongie, Serge
    30TH IEEE CONFERENCE ON COMPUTER VISION AND PATTERN RECOGNITION (CVPR 2017), 2017, : 1866 - 1875
  • [28] Graphical Generative Adversarial Networks
    Li, Chongxuan
    Welling, Max
    Zhu, Jun
    Zhang, Bo
    ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS 31 (NIPS 2018), 2018, 31
  • [29] Triangle Generative Adversarial Networks
    Gan, Zhe
    Chen, Liqun
    Wang, Weiyao
    Pu, Yunchen
    Zhang, Yizhe
    Liu, Hao
    Li, Chunyuan
    Carin, Lawrence
    ADVANCES IN NEURAL INFORMATION PROCESSING SYSTEMS 30 (NIPS 2017), 2017, 30
  • [30] Evolutionary Generative Adversarial Networks
    Wang, Chaoyue
    Xu, Chang
    Yao, Xin
    Tao, Dacheng
    IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION, 2019, 23 (06) : 921 - 934