Exploring the Advantages of Quantum Generative Adversarial Networks in Generative Chemistry

被引:19
|
作者
Kao, Po-Yu [1 ]
Yang, Ya-Chu [1 ]
Chiang, Wei-Yin [2 ]
Hsiao, Jen-Yueh [2 ]
Cao, Yudong [3 ]
Aliper, Alex [4 ]
Ren, Feng [5 ]
Aspuru-Guzik, Alan [6 ,7 ,8 ,9 ]
Zhavoronkov, Alex [10 ]
Hsieh, Min-Hsiu [2 ]
Lin, Yen-Chu [1 ,11 ]
机构
[1] Insil Med Taiwan Ltd, Taipei 110208, Taiwan
[2] Hon Hai Foxconn Res Inst, Taipei 114699, Taiwan
[3] Zapata Comp Inc, Boston, MA 02110 USA
[4] Insil Med AI Ltd, Abu Dhabi 145748, U Arab Emirates
[5] Insil Med Shanghai Ltd, Shanghai 201203, Peoples R China
[6] Univ Toronto, Dept Chem, Toronto, ON M5S 3H6, Canada
[7] Univ Toronto, Dept Comp Sci, Toronto, ON M5S 2E4, Canada
[8] Vector Inst Artificial Intelligence, Toronto, ON M5S 1M1, Canada
[9] Canadian Inst Adv Res, Toronto, ON M5S 1M1, Canada
[10] Insil Med Hong Kong Ltd, Hong Kong 999077, Peoples R China
[11] Natl Yang Ming Chiao Tung Univ, Dept Pharm, Taipei 112304, Taiwan
关键词
SMALL MOLECULES;
D O I
10.1021/acs.jcim.3c00562
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
De novo drug design with desired biological activitiesis crucialfor developing novel therapeutics for patients. The drug developmentprocess is time- and resource-consuming, and it has a low probabilityof success. Recent advances in machine learning and deep learningtechnology have reduced the time and cost of the discovery processand therefore, improved pharmaceutical research and development. Inthis paper, we explore the combination of two rapidly developing fieldswith lead candidate discovery in the drug development process. First,artificial intelligence has already been demonstrated to successfullyaccelerate conventional drug design approaches. Second, quantum computinghas demonstrated promising potential in different applications, suchas quantum chemistry, combinatorial optimizations, and machine learning.This article explores hybrid quantum-classical generative adversarialnetworks (GAN) for small molecule discovery. We substituted each elementof GAN with a variational quantum circuit (VQC) and demonstrated thequantum advantages in the small drug discovery. Utilizing a VQC inthe noise generator of a GAN to generate small molecules achievesbetter physicochemical properties and performance in the goal-directedbenchmark than the classical counterpart. Moreover, we demonstratethe potential of a VQC with only tens of learnable parameters in thegenerator of GAN to generate small molecules. We also demonstratethe quantum advantage of a VQC in the discriminator of GAN. In thishybrid model, the number of learnable parameters is significantlyless than the classical ones, and it can still generate valid molecules.The hybrid model with only tens of training parameters in the quantumdiscriminator outperforms the MLP-based one in terms of both generatedmolecule properties and the achieved KL divergence. However, the hybridquantum-classical GANs still face challenges in generating uniqueand valid molecules compared to their classical counterparts.
引用
收藏
页码:3307 / 3318
页数:12
相关论文
共 50 条
  • [1] Quantum generative adversarial networks
    Dallaire-Demers, Pierre-Luc
    Killoran, Nathan
    PHYSICAL REVIEW A, 2018, 98 (01)
  • [2] Exploring generative adversarial networks and adversarial training
    Sajeeda A.
    Hossain B.M.M.
    Int. J. Cogn. Comp. Eng., (78-89): : 78 - 89
  • [3] Entangling Quantum Generative Adversarial Networks
    Niu, Murphy Yuezhen
    Zlokapa, Alexander
    Broughton, Michael
    Boixo, Sergio
    Mohseni, Masoud
    Smelyanskyi, Vadim
    Neven, Hartmut
    PHYSICAL REVIEW LETTERS, 2022, 128 (22)
  • [4] Hamiltonian quantum generative adversarial networks
    Kim, Leeseok
    Lloyd, Seth
    Marvian, Milad
    PHYSICAL REVIEW RESEARCH, 2024, 6 (03):
  • [5] Hierarchical Modes Exploring in Generative Adversarial Networks
    Hu, Mengxiao
    Li, Jinlong
    Hu, Maolin
    Hu, Tao
    THIRTY-FOURTH AAAI CONFERENCE ON ARTIFICIAL INTELLIGENCE, THE THIRTY-SECOND INNOVATIVE APPLICATIONS OF ARTIFICIAL INTELLIGENCE CONFERENCE AND THE TENTH AAAI SYMPOSIUM ON EDUCATIONAL ADVANCES IN ARTIFICIAL INTELLIGENCE, 2020, 34 : 10981 - 10988
  • [6] Generative Adversarial Networks
    Goodfellow, Ian
    Pouget-Abadie, Jean
    Mirza, Mehdi
    Xu, Bing
    Warde-Farley, David
    Ozair, Sherjil
    Courville, Aaron
    Bengio, Yoshua
    COMMUNICATIONS OF THE ACM, 2020, 63 (11) : 139 - 144
  • [7] Exploring Expression-based Generative Adversarial Networks
    Baeta, Francisco
    Correia, Joao
    Martins, Tiago
    Machado, Penousal
    PROCEEDINGS OF THE 2022 GENETIC AND EVOLUTIONARY COMPUTATION CONFERENCE COMPANION, GECCO 2022, 2022, : 1862 - 1869
  • [8] Impact of quantum noise on the training of quantum Generative Adversarial Networks
    Borras, Kerstin
    Chang, Su Yeon
    Funcke, Lena
    Grossi, Michele
    Hartung, Tobias
    Jansen, Karl
    Kruecker, Dirk
    Kuhn, Stefan
    Rehm, Florian
    Tueysuez, Cenk
    Vallecorsa, Sofia
    20TH INTERNATIONAL WORKSHOP ON ADVANCED COMPUTING AND ANALYSIS TECHNIQUES IN PHYSICS RESEARCH, 2023, 2438
  • [9] Quantum Generative Adversarial Networks: Bridging Classical and Quantum Realms
    Nokhwal, Sahil
    Nokhwal, Suman
    Pahune, Saurabh
    Chaudhary, Ankit
    2024 8TH INTERNATIONAL CONFERENCE ON INTELLIGENT SYSTEMS, METAHEURISTICS & SWARM INTELLIGENCE, ISMSI 2024, 2024, : 105 - 109
  • [10] Optimized Quantum Generative Adversarial Networks for Distribution Loading
    Agliardi, Gabriele
    Prati, Enrico
    2022 IEEE INTERNATIONAL CONFERENCE ON QUANTUM COMPUTING AND ENGINEERING (QCE 2022), 2022, : 824 - 827