Revealing the diagnostic value and immune infiltration of senescence-related genes in endometriosis: a combined single-cell and machine learning analysis

被引:1
|
作者
Zou, Lian [1 ]
Meng, Lou [1 ]
Xu, Yan [1 ]
Wang, Kana [2 ]
Zhang, Jiawen [2 ]
机构
[1] Chongging Univ, Chongqing Emergency Med Ctr, Dept Obstet & Gynecol, Cent Hosp, Chongqing, Peoples R China
[2] Sichuan Univ, Dept Gynecol, West China Second Hosp, Chengdu, Peoples R China
关键词
machine learning; immune infiltration; endometriosis; senescence-related genes; aging; integrative bioinformatics; senescence-associated molecular; LMNA GENE; EXPRESSION; RESISTANCE; PROVIDES; LEVEL; WOMEN; VEGF;
D O I
10.3389/fphar.2023.1259467
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Introduction: Endometriosis is a prevalent and recurrent medical condition associated with symptoms such as pelvic discomfort, dysmenorrhea, and reproductive challenges. Furthermore, it has the potential to progress into a malignant state, significantly impacting the quality of life for affected individuals. Despite its significance, there is currently a lack of precise and non-invasive diagnostic techniques for this condition.Methods: In this study, we leveraged microarray datasets and employed a multifaceted approach. We conducted differential gene analysis, implemented weighted gene co-expression network analysis (WGCNA), and utilized machine learning algorithms, including random forest, support vector machine, and LASSO analysis, to comprehensively explore senescence-related genes (SRGs) associated with endometriosis.Discussion: Our comprehensive analysis, which also encompassed profiling of immune cell infiltration and single-cell analysis, highlights the therapeutic potential of this gene assemblage as promising targets for alleviating endometriosis. Furthermore, the integration of these biomarkers into diagnostic protocols promises to enhance diagnostic precision, offering a more effective diagnostic journey for future endometriosis patients in clinical settings.Results: Our meticulous investigation led to the identification of a cluster of genes, namely BAK1, LMNA, and FLT1, which emerged as potential discerning biomarkers for endometriosis. These biomarkers were subsequently utilized to construct an artificial neural network classifier model and were graphically represented in the form of a Nomogram.
引用
收藏
页数:14
相关论文
共 50 条
  • [41] Bioinformatic analysis and machine learning to identify the diagnostic biomarkers and immune infiltration in adenomyosis
    Liu, Dan
    Yin, Xiangjie
    Guan, Xiaohong
    Li, Kunming
    FRONTIERS IN GENETICS, 2023, 13
  • [42] Prognostic value of immune-related genes and comparative analysis of immune cell infiltration in lung adenocarcinoma: sex differences
    Tao Fan
    Chunxiang Li
    Jie He
    Biology of Sex Differences, 12
  • [43] Prognostic value of immune-related genes and comparative analysis of immune cell infiltration in lung adenocarcinoma: sex differences
    Fan, Tao
    Li, Chunxiang
    He, Jie
    BIOLOGY OF SEX DIFFERENCES, 2021, 12 (01)
  • [44] Machine learning-based screening of the diagnostic genes and their relationship with immune-cell infiltration in patients with lung adenocarcinoma
    Wang, Shuying
    Wang, Qiong
    Fan, Bin
    Gong, Jiao
    Sun, Liping
    Hu, Bo
    Wang, Deqing
    JOURNAL OF THORACIC DISEASE, 2022, 14 (03) : 699 - +
  • [45] Integration analysis of senescence-related genes to predict prognosis and immunotherapy response in soft-tissue sarcoma: evidence based on machine learning and experiments
    Qi, Lin
    Chen, Fangyue
    Wang, Lu
    Yang, Zhimin
    Zhang, Wenchao
    Li, Zhihong
    FRONTIERS IN PHARMACOLOGY, 2023, 14
  • [46] Identification of Key Genes in the Colorectal Cancer Immune Microenvironment Through Integrated Analysis of Immune Infiltration Algorithms and Single-Cell Transcriptomics
    Liu, Yang
    Chen, Teng
    PROCEEDINGS OF 2024 4TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND INTELLIGENT COMPUTING, BIC 2024, 2024, : 408 - 413
  • [47] Age- related genes affecting the immune cell infiltration in ulcerative colitis revealed by weighted correlation network analysis and machine learning
    Chen, H. -L.
    Liu, Y. -H.
    Tan, C. -H.
    EUROPEAN REVIEW FOR MEDICAL AND PHARMACOLOGICAL SCIENCES, 2023, 27 (18) : 8447 - 8462
  • [48] Identification and Analysis of Senescence-Related Genes in Head and Neck Squamous Cell Carcinoma by a Comprehensive Bioinformatics Approach
    Deng, Lin
    Mi, Jinglin
    Ruan, Xiaolan
    Zhang, Guozhen
    Pan, Yufei
    Wang, Rensheng
    MEDIATORS OF INFLAMMATION, 2022, 2022
  • [49] Construction and analysis of a joint diagnostic model of machine learning for cryptorchidism based on single-cell sequencing
    Chen, Yuehua
    Zhou, Xiaomeng
    Ji, Linghua
    Zhao, Jun
    Xian, Hua
    Xu, Yunzhao
    Wang, Ziheng
    Ge, Wenliang
    BIRTH DEFECTS RESEARCH, 2024, 116 (03):
  • [50] Comprehensive analysis of anoikis-related genes in prognosis and immune infiltration of gastric cancer based on bulk and single-cell RNA sequencing data
    Xiaobo Yang
    Zheng Zhu
    Tianyu Liang
    Xiaoju Lei
    Journal of Cancer Research and Clinical Oncology, 2023, 149 : 13163 - 13173