Ab Initio Derived Classical Force Field for Molecular Dynamics Simulations of ZnO Surfaces in Biological Environment

被引:6
|
作者
Saeedimasine, Marzieh [1 ]
Grote, Fredrik [1 ]
Lyubartsev, Alexander P. [1 ]
机构
[1] Stockholm Univ, Dept Mat & Environm Chem, SE-10691 Stockholm, Sweden
来源
JOURNAL OF PHYSICAL CHEMISTRY A | 2023年 / 127卷 / 25期
基金
瑞典研究理事会; 欧盟地平线“2020”;
关键词
WATER-ADSORPTION; TIGHT-BINDING; AMINO-ACIDS; ZINC-OXIDE; NANOPARTICLES; INTERFACE; ENERGIES;
D O I
10.1021/acs.jpca.3c00424
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Zinc oxide nanostructuresare used in an ever increasing line ofapplications in technology and biomedical fields. This requires adetailed understanding of the phenomena that occur at the surfaceparticularly in aqueous environments and in contact with biomolecules.In this work, we used ab initio molecular dynamics (AIMD) simulationsto determine structural details of ZnO surfaces in water and to developa general and transferable classical force field for hydrated ZnOsurfaces. AIMD simulations show that water molecules dissociate nearunmodified ZnO surfaces, forming hydroxyl groups at about 65% of thesurface Zn atoms and protonating 3-coordinated surface oxygen atoms,while the rest of the surface Zn atoms bind molecularly adsorbed waters.Several force field atom types for ZnO surface atoms were identifiedby analysis of the specific connectivities of atoms. The analysisof the electron density was then used to determine partial chargesand Lennard-Jones parameters for the identified force field atom types.The obtained force field was validated by comparison with AIMD resultsand with available experimental data on adsorption and immersion enthalpies,as well as adsorption free energies of several amino acids in methanol.The developed force field can be used for modeling of ZnO in aqueousand other fluid environments and in interaction with biomolecules.
引用
收藏
页码:5446 / 5457
页数:12
相关论文
共 50 条
  • [21] Structure and dynamics of hydrophobic hydration shells: A molecular description based on ab initio and classical molecular dynamics simulations
    Duboue-Dijon, Elise
    Stirnemann, Guillaume
    Laage, Damien
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2015, 250
  • [22] Ab initio derived spectroscopic quality force fields for molecular modeling and dynamics
    Dasgupta, S
    Brameld, KA
    Fan, CF
    Goddard, WA
    SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 1997, 53 (08) : 1347 - 1363
  • [23] Improved classical force fields for ionic liquids using ab initio molecular dynamics
    Zhang, Yong
    Maginn, Edward
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 244
  • [24] Molecular mechanics valence force field for sulfonamides derived by ab initio methods
    Nicholas, John B.
    Vance, Robert
    Martin, Eric
    Burke, Benjamin J.
    Hopfinger, A.J.
    Journal of Physical Chemistry, 1991, 95 (24):
  • [25] Unravelling the nature of glyphosate binding to goethite surfaces by ab initio molecular dynamics simulations
    Ahmed, Ashour A.
    Leinweber, Peter
    Kuehn, Oliver
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2018, 20 (03) : 1531 - 1539
  • [26] Ab Initio Molecular Dynamics Simulations of the Adsorption of H2 on Palladium Surfaces
    Gross, Axel
    CHEMPHYSCHEM, 2010, 11 (07) : 1374 - 1381
  • [27] Assessing the accuracy of improved force-matched water models derived from Ab initio molecular dynamics simulations
    Koester, Andreas
    Spura, Thomas
    Rutkai, Gabor
    Kessler, Jan
    Wiebeler, Hendrik
    Vrabec, Jadran
    Kuehne, Thomas D.
    JOURNAL OF COMPUTATIONAL CHEMISTRY, 2016, 37 (19) : 1828 - 1838
  • [28] Ab initio molecular dynamics simulations of molecular collisions of nitromethane
    Wei, DQ
    Zhang, F
    Woo, TK
    SHOCK COMPRESSION OF CONDENSED MATTER-2001, PTS 1 AND 2, PROCEEDINGS, 2002, 620 : 407 - 410
  • [29] Controlling the shape and flexibility of arylamides: A combined ab initio, ab initio molecular dynamics, and classical molecular dynamics study
    Pophristic, V
    Vemparala, S
    Ivanov, I
    Liu, ZW
    Klein, ML
    DeGrado, WF
    JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (08): : 3517 - 3526
  • [30] Amorphous zirconia: ab initio molecular dynamics simulations
    Durandurdu, Murat
    PHILOSOPHICAL MAGAZINE, 2017, 97 (16) : 1334 - 1345