Predictive investigation of idiopathic pulmonary fibrosis subtypes based on cellular senescence-related genes for disease treatment and management

被引:4
|
作者
Yang, Changqing [1 ]
Han, Ziqi [1 ]
Zhan, Wenyu [1 ]
Wang, Yubao [1 ]
Feng, Jing [1 ]
机构
[1] Tianjin Med Univ, Resp Dept, Gen Hosp, Tianjin, Peoples R China
基金
中国国家自然科学基金;
关键词
idiopathic pulmonary fibrosis; cellular senescence; subtype; prognosis; treatment; TGF-BETA; MORTALITY; DIFFERENTIATION; DYSFUNCTION; PROGRESSION; SURVIVAL; IMPACT; CGAS;
D O I
10.3389/fgene.2023.1157258
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Background: Idiopathic pulmonary fibrosis (IPF), a chronic, progressive lung disease characterized by interstitial remodeling and tissue destruction, affects people worldwide and places a great burden on society. Cellular senescence is thought to be involved in the mechanisms and development of IPF. The aim of this study was to predictively investigate subtypes of IPF according to cellular senescence-related genes and their correlation with the outcome of patients with IPF, providing possible treatment and management options for disease control. Methods: Gene expression profiles and follow-up data were obtained from the GEO database. Senescence-related genes were obtained from the CSGene database and analyzed their correlation with the outcome of IPF. A consensus cluster was constructed to classify the samples based on correlated genes. The GSVA and WGCNA packages in R were used to calculate the immune-related enriched fractions and construct gene expression modules, respectively. Metascape and the clusterProfiler package in R were used to enrich gene functions. The ConnectivityMap was used to probe suitable drugs for potential treatment. Results: A total of 99 cellular senescence-related genes were associated with IPF prognosis. Patients with IPF were divided into two subtypes with significant prognostic differences. Subtype S2 was characterized by enhanced fibrotic progression and infection, leading to acute exacerbation of IPF and poor prognosis. Finally, five cellular senescence-related genes, TYMS, HJURP, UBE2C, BIRC5, and KIF2C, were identified as potential biomarkers in poor prognostic patients with IPF. Conclusion: The study findings indicate that cellular senescence-related genes can be used to distinguish the prognosis of patients with IPF. Among them, five genes can be used as candidate biomarkers to predict patients with a poor prognostic subtype for which anti-fibrosis and anti-infection treatments could be suitable.
引用
收藏
页数:12
相关论文
共 31 条
  • [31] Computational investigation of TGF-beta receptor inhibitors for treatment of idiopathic pulmonary fibrosis: Field-based QSAR model and molecular dynamics simulation
    Li, Wei
    Liu, Xue
    Muhammad, Suleiman
    Shi, JiYue
    Meng, YanQiu
    Wang, Jian
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2018, 76 : 139 - 150