The Diagnostic Yield of Next Generation Sequencing in Inherited Retinal Diseases: A Systematic Review and Meta-analysis

被引:35
|
作者
Britten-jones, Alexis Ceecee [1 ,2 ,3 ,6 ]
Gocuk, Sena A. [1 ,2 ,3 ]
Goh, Kai Lyn [2 ,3 ]
Huq, Aamira [4 ,5 ]
Edwards, Thomas L. [2 ,3 ]
Ayton, Lauren N. [1 ,2 ,3 ]
机构
[1] Univ Melbourne, Fac Med Dent & Hlth Sci, Dept Optometry & Vis Sci, Parkville, Vic, Australia
[2] Univ Melbourne, Fac Med Dent & Hlth Sci, Dept Surg Ophthalmol, Parkville, Vic, Australia
[3] Royal Victorian Eye & Ear Hosp, Ctr Eye Res Australia, Melbourne, Vic, Australia
[4] Royal Melbourne Hosp, Dept Genom Med, Parkville, Vic, Australia
[5] Univ Melbourne, Fac Med Dent & Hlth Sci, Dept Med, Parkville, Vic, Australia
[6] Univ Melbourne, Parkville, Vic, Australia
基金
英国医学研究理事会;
关键词
LEBER CONGENITAL AMAUROSIS; RETINITIS-PIGMENTOSA; MOLECULAR DIAGNOSIS; MUTATION SPECTRUM; LARGE COHORT; METHODOLOGICAL GUIDANCE; GENETIC-ANALYSIS; DYSTROPHY; VARIANTS; RECOMMENDATIONS;
D O I
10.1016/j.ajo.2022.12.027
中图分类号
R77 [眼科学];
学科分类号
100212 ;
摘要
center dot PURPOSE: Accurate genotyping of individuals with in-herited retinal diseases (IRD) is essential for patient man-agement and identifying suitable candidates for gene ther-apies. This study evaluated the diagnostic yield of next generation sequencing (NGS) in IRDs.center dot DESIGN: Systematic review and meta-analysis.center dot METHODS: This systematic review was prospectively registered (CRD42021293619). Ovid MEDLINE and Ovid Embase were searched on 6 June 2022. Clinical studies evaluating the diagnostic yield of NGS in individ-uals with IRDs were eligible for inclusion. Risk of bias assessment was performed. Studies were pooled using a random-effects inverse variance model. Sources of het-erogeneity were explored using stratified analysis, meta-regression, and sensitivity analysis.center dot RESULTS: This study included 105 publications from 28 countries. Most studies (90 studies) used targeted gene panels. The diagnostic yield of NGS was 61.3% (95% confidence interval: 57.8-64.7%; 51 studies) in mixed IRD phenotypes, 58.2% (51.6-64.6%; 41 stud-ies) in rod-cone dystrophies, 57.7% (46.8-68.3%; eight studies) in macular and cone/cone-rod dystrophies, and 47.6% (95% CI: 41.0-54.3%; four studies) in familial exudative vitreoretinopathy. For mixed IRD phenotypes, a higher diagnostic yield was achieved pooling studies published between 2018-2022 (64.2% [59.5-68.7%]), studies using exome sequencing (73.5% [58.9-86.1%]), and studies using the American College of Medical Ge-netics variant interpretation standards (65.6% [60.8- 70.4%]).center dot CONCLUSION: The current diagnostic yield of NGS in IRDs is between 52-74%. The certainty of the evi-dence was judged as low or very low. A key limitation of the current evidence is the significant heterogeneity be-tween studies. Adoption of standardized reporting guide-lines could improve confidence in future meta-analyses. (Am J Ophthalmol 2023;249: 57-73.(c) 2022 Elsevier Inc. All rights reserved.)
引用
收藏
页码:57 / 73
页数:17
相关论文
共 50 条
  • [41] Diagnostic yield of targeted versus broad next generation sequencing data analysis in inherited cardiomyopathy and arrhythmia syndromes
    Kolokotronis, K.
    Pluta, N.
    Klopocki, E.
    Stoerk, S.
    Rost, S.
    Gerull, B.
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2020, 28 (SUPPL 1) : 261 - 261
  • [42] Diagnostic yield and safety of navigation bronchoscopy: A systematic review and meta-analysis
    Kops, Stephan E. P.
    Heus, Pauline
    Korevaar, Daniel A.
    Damen, Johanna A. A.
    Idema, Demy L.
    Verhoeven, Roel L. J.
    Annema, Jouke T.
    Hooft, Lotty
    van der Heijden, Erik H. F. M.
    LUNG CANCER, 2023, 180
  • [43] The Diagnostic Accuracy of Metagenomic Next-Generation Sequencing in Diagnosing Pneumocystis Pneumonia: A Systemic Review and Meta-analysis
    Tekin, Aysun
    Truong, Hong Hieu
    Rovati, Lucrezia
    Lal, Amos
    Gerberi, Danielle J.
    Gajic, Ognjen
    O'Horo, John C.
    OPEN FORUM INFECTIOUS DISEASES, 2023, 10 (09):
  • [44] Challenges using diagnostic next-generation sequencing in the clinical environment for inherited retinal disorders
    Davies, Wayne I. L.
    PERSONALIZED MEDICINE, 2014, 11 (01) : 99 - 111
  • [45] Inherited and acquired thrombophilia in adults with retinal vascular occlusion: A systematic review and meta-analysis
    Romiti, Giulio Francesco
    Corica, Bernadette
    Borgi, Marco
    Visioli, Giacomo
    Pacella, Elena
    Cangemi, Roberto
    Proietti, Marco
    Basili, Stefania
    Raparelli, Valeria
    JOURNAL OF THROMBOSIS AND HAEMOSTASIS, 2020, 18 (12) : 3249 - 3266
  • [46] Diagnostic Yield of Exome Sequencing in Cerebral Palsy and Implications for Genetic Testing Guidelines A Systematic Review and Meta-analysis
    Gonzalez-Mantilla, Pedro J.
    Hu, Yirui
    Myers, Scott M.
    Finucane, Brenda M.
    Ledbetter, David H.
    Martin, Christa L.
    Moreno-De-Luca, Andres
    JAMA PEDIATRICS, 2023, 177 (05) : 472 - 478
  • [47] Diagnostic Yield of Exome Sequencing in Cerebral Palsy and Implications for Genetic Testing Guidelines: A Systematic Review and Meta-analysis
    Gonzalez-Mantilla, P. J.
    Hu, Y.
    Myers, S. M.
    Finucane, B. M.
    Ledbetter, D. H.
    Martin, C. L.
    Moreno-De-Luca, A.
    OBSTETRICAL & GYNECOLOGICAL SURVEY, 2023, 78 (11) : 638 - 639
  • [48] The Effectiveness of Metagenomic Next-Generation Sequencing in the Diagnosis of Prosthetic Joint Infection: A Systematic Review and Meta-Analysis
    Tan, Jun
    Liu, Yang
    Ehnert, Sabrina
    Nuessler, Andreas K.
    Yu, Yang
    Xu, Jianzhong
    Chen, Tao
    FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, 2022, 12
  • [49] Targeted next-generation sequencing to diagnose drug-resistant tuberculosis: a systematic review and meta-analysis
    Schwab, Tiana Carina
    Perrig, Lisa
    Goller, Pauline Carlotta
    De la Hoz, Freddy Fernando Guebely
    Lahousse, Adrien Philippe
    Minder, Beatrice
    Gunther, Gunar
    Efthimiou, Orestis
    Omar, Shaheed Vally
    Egger, Matthias
    Fenner, Lukas
    LANCET INFECTIOUS DISEASES, 2024, 24 (10): : 1162 - 1176
  • [50] Accuracy of next-generation sequencing for rapid diagnosis of tuberculous pleurisy: A protocol of systematic review and meta-analysis
    Ling, Yuyang
    Shen, Yanqin
    Xu, Xudong
    Yu, Guocan
    PLOS ONE, 2025, 20 (02):