Editorial: Applications of RNA-seq in cancer and tumor research

被引:2
|
作者
Lang, Jidong [1 ]
Cho, William C. [2 ]
Huang, Tao [3 ]
Wu, Taoyang [4 ]
Xu, Junlin [5 ]
机构
[1] Qitan Technol Beijing Co Ltd, Dept Bioinformat, Beijing, Peoples R China
[2] Queen Elizabeth Hosp, Dept Clin Oncol, Hong Kong, Peoples R China
[3] Chinese Acad Sci, Shanghai Inst Nutr & Hlth, Shanghai, Peoples R China
[4] Univ East Anglia, Sch Comp Sci, Norwich, England
[5] Hunan Univ, Coll Comp Sci & Elect Engn, Changsha, Peoples R China
关键词
RNA sequencing; cancer research; next-generation sequencing; biomarker; machine learning;
D O I
10.3389/fgene.2023.1331576
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
引用
收藏
页数:3
相关论文
共 50 条
  • [41] RNA-Seq methods for imperfect samples: development, evaluation and applications
    Xian Adiconis
    Lin Fan
    David DeLuca
    Andrey Sivachenko
    Nathalie Pochet
    Aaron Berlin
    Sarah Young
    Gad Getz
    Aviv Regev
    Chad Nusbaum
    Andreas Gnirke
    Joshua Z Levin
    Genome Biology, 12
  • [42] RNA-Seq methods for imperfect samples: development, evaluation and applications
    Adiconis, Xian
    Fan, Lin
    DeLuca, David
    Sivachenko, Andrey
    Pochet, Nathalie
    Berlin, Aaron
    Young, Sarah
    Getz, Gad
    Regev, Aviv
    Nusbaum, Chad
    Gnirke, Andreas
    Levin, Joshua Z.
    GENOME BIOLOGY, 2011, 12 : 4 - 4
  • [43] Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM)
    Grant, Gregory R.
    Farkas, Michael H.
    Pizarro, Angel D.
    Lahens, Nicholas F.
    Schug, Jonathan
    Brunk, Brian P.
    Stoeckert, Christian J.
    Hogenesch, John B.
    Pierce, Eric A.
    BIOINFORMATICS, 2011, 27 (18) : 2518 - 2528
  • [44] Integrated analysis of single-cell RNA-seq and bulk RNA-seq reveals MMP mediated expression patterns by distinct tumor microenvironment immune profiles in cervical cancer
    Wang, He
    Li, Xinbo
    Zhou, Siyu
    Guo, Wendi
    Wang, Zhao
    Sun, Linlin
    Zhao, Zhongyi
    Han, Yanyan
    Zhang, Sanyuan
    Lv, Jieping
    Ping, Yi
    Wang, Zhe
    JOURNAL OF CANCER, 2024, 15 (16): : 5258 - 5276
  • [45] Elucidation of taxane resistance in prostate cancer through RNA-Seq analysis of circulating tumor cells
    Zhang, Jiaren
    Gjyrezi, Ada
    Thakkar, Prashant
    Galletti, Giuseppe
    Verma, Akanksha
    Elemento, Olivier
    Giannakakou, Paraskevi
    CANCER RESEARCH, 2016, 76
  • [46] RNA-Rocket: an RNA-Seq analysis resource for infectious disease research
    Warren, Andrew S.
    Aurrecoechea, Cristina
    Brunk, Brian
    Desai, Prerak
    Emrich, Scott
    Giraldo-Calderon, Gloria I.
    Harb, Omar
    Hix, Deborah
    Lawson, Daniel
    Machi, Dustin
    Mao, Chunhong
    McClelland, Michael
    Nordberg, Eric
    Shukla, Maulik
    Vosshall, Leslie B.
    Wattam, Alice R.
    Will, Rebecca
    Yoo, Hyun Seung
    Sobral, Bruno
    BIOINFORMATICS, 2015, 31 (09) : 1496 - 1498
  • [47] RNA-seq data in pain research-an illustrated guide
    Crow, Megan
    Denk, Franziska
    PAIN, 2019, 160 (07) : 1502 - 1504
  • [48] RNA-seq in Skeletal Biology
    Ugur Ayturk
    Current Osteoporosis Reports, 2019, 17 : 178 - 185
  • [49] RNA-Seq analysis in MeV
    Howe, Eleanor A.
    Sinha, Raktim
    Schlauch, Daniel
    Quackenbush, John
    BIOINFORMATICS, 2011, 27 (22) : 3209 - 3210
  • [50] Digging deep with RNA-Seq
    Louisa Flintoft
    Nature Reviews Genetics, 2008, 9 : 568 - 568